Os05g0193100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-related domain containing protein.
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Os05g0193100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.28 | 0.405 | 10.7 | -1.35 | 1.74 | 1.1 | -0.232 | -2.83 | -0.775 | 13.9 | 25.71 | 1401 | -- | -- |
| 81.63 | 0.421 | 10.6 | -0.527 | 1.75 | 0.976 | -0.107 | -- | -0.555 | 13.9 | 25.7 | 1417 | -- | -- |
| 74.49 | 0.402 | 10.7 | -1.34 | 1.74 | 1.09 | -- | -2.79 | -0.771 | 13.9 | 25.72 | 1401 | -- | -- |
| 81.29 | 0.42 | 10.6 | -0.495 | 1.77 | 0.931 | -- | -- | -0.534 | 13.9 | 25.6 | 1384 | -- | -- |
| 178.05 | 0.625 | 10.6 | -0.523 | -- | 0.951 | -- | -0.26 | -0.52 | -- | 25.72 | 1401 | -- | -- |
| 105.3 | 0.481 | 10.5 | -0.19 | 1.66 | -- | -0.122 | -- | -0.196 | 13.8 | -- | -- | -- | -- |
| 105.36 | 0.481 | 10.5 | -0.194 | 1.66 | -- | -- | -- | -0.197 | 13.8 | -- | -- | -- | -- |
| 173.76 | 0.617 | 10.6 | -0.503 | -- | 0.993 | -- | -- | -0.483 | -- | 26.36 | 4697 | -- | -- |
| 87.63 | 0.436 | 10.6 | -- | 1.76 | 0.905 | -- | -- | -0.516 | 13.9 | 25.4 | 1379 | -- | -- |
| 271.28 | 0.77 | 10.5 | -0.262 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 106.35 | 0.482 | 10.5 | -- | 1.66 | -- | -- | -- | -0.175 | 13.8 | -- | -- | -- | -- |
| 180.33 | 0.627 | 10.6 | -- | -- | 0.961 | -- | -- | -0.42 | -- | 26.36 | 4697 | -- | -- |
| 273.09 | 0.771 | 10.5 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 8 | 73.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 11 | 73.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 38 | 73.44 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 121 | 74.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 196 | 75.34 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 200 | 75.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 236 | 75.75 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 237 | 75.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 251 | 75.89 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 261 | 76.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 266 | 76.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 287 | 76.23 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 302 | 76.29 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 303 | 76.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 346 | 76.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 347 | 76.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 361 | 76.52 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 409 | 76.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 446 | 76.73 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 460 | 76.77 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 498 | 76.82 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 539 | 76.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 602 | 77.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 769 | 77.43 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 862 | 77.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 923 | 77.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 996 | 77.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 20 |