BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0185600 Os05g0185600|J075122G08
         (172 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0185600  Hypothetical protein                                313   3e-86
Os01g0187400  Conserved hypothetical protein                      182   9e-47

>Os05g0185600 Hypothetical protein
          Length = 172

 Score =  313 bits (803), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/172 (92%), Positives = 159/172 (92%)

Query: 1   VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60
           VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL
Sbjct: 1   VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60

Query: 61  ISQDLVGLVISILLLADFSLVLLTFLQLYSYSMIDXXXXXXXXXXXXXAPFPAGINALFS 120
           ISQDLVGLVISILLLADFSLVLLTFLQLYSYSMID             APFPAGINALFS
Sbjct: 61  ISQDLVGLVISILLLADFSLVLLTFLQLYSYSMIDVLLVLFVLPLGILAPFPAGINALFS 120

Query: 121 HGPRRSAGLARVYALWNITSLVNVIVAFACGLVHYKSSAKRHPSMQPWNLGG 172
           HGPRRSAGLARVYALWNITSLVNVIVAFACGLVHYKSSAKRHPSMQPWNLGG
Sbjct: 121 HGPRRSAGLARVYALWNITSLVNVIVAFACGLVHYKSSAKRHPSMQPWNLGG 172



>Os01g0187400 Conserved hypothetical protein
          Length = 1431

 Score =  182 bits (462), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 91/109 (83%), Positives = 93/109 (85%)

Query: 63   QDLVGLVISILLLADFSLVLLTFLQLYSYSMIDXXXXXXXXXXXXXAPFPAGINALFSHG 122
            QDLVGLVISILLLADFSLVLLTFLQLYSYSM D             +PFPAGINALFSHG
Sbjct: 1274 QDLVGLVISILLLADFSLVLLTFLQLYSYSMADVLLVLFVLPLGILSPFPAGINALFSHG 1333

Query: 123  PRRSAGLARVYALWNITSLVNVIVAFACGLVHYKSSAKRHPSMQPWNLG 171
            PRRSAGLARVYALWNITSLVNV+VAFACGLVHYKSS KRHPS QPWNLG
Sbjct: 1334 PRRSAGLARVYALWNITSLVNVVVAFACGLVHYKSSTKRHPSTQPWNLG 1382




 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/63 (90%), Positives = 59/63 (93%)

Query: 1    VAATPDLMLGYLDFFLGGDEKRPDLPPRLHQRLPMSLIFGGDGSYMAPFSLHSDSVVTSL 60
            V ATPDLMLGYLDFFLGGDEKRPDLPPRL QR PM LIFGGDGSYMAPFSLHSDSV+TSL
Sbjct: 1057 VTATPDLMLGYLDFFLGGDEKRPDLPPRLRQRFPMCLIFGGDGSYMAPFSLHSDSVLTSL 1116

Query: 61   ISQ 63
            +SQ
Sbjct: 1117 MSQ 1119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,616,779
Number of extensions: 203226
Number of successful extensions: 518
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)