Os01g0187400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0187400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.91 | 0.175 | 11.8 | 0.507 | 0.322 | -0.517 | 0.533 | 1.5 | 0.22 | 8.01 | 22.06 | 849 | -- | -- |
| 15.15 | 0.181 | 11.8 | 0.167 | 0.321 | -0.417 | 0.243 | -- | 0.124 | 7.86 | 21.13 | 785 | -- | -- |
| 14.53 | 0.178 | 11.8 | 0.431 | 0.329 | -0.507 | -- | 1.13 | 0.189 | 7.65 | 22.7 | 871 | -- | -- |
| 15.27 | 0.182 | 11.8 | 0.174 | 0.327 | -0.42 | -- | -- | 0.124 | 7.79 | 22.57 | 810 | -- | -- |
| 17.5 | 0.195 | 11.8 | 0.541 | -- | -0.783 | -- | 1.8 | 0.22 | -- | 23.74 | 691 | -- | -- |
| 18.86 | 0.204 | 11.8 | 0.0486 | 0.45 | -- | 0.353 | -- | 0.049 | 8.26 | -- | -- | -- | -- |
| 19.24 | 0.205 | 11.8 | 0.0587 | 0.451 | -- | -- | -- | 0.0485 | 8.17 | -- | -- | -- | -- |
| 18.78 | 0.202 | 11.8 | 0.203 | -- | -0.646 | -- | -- | 0.132 | -- | 23.75 | 689 | -- | -- |
| 15.96 | 0.186 | 11.8 | -- | 0.338 | -0.365 | -- | -- | 0.096 | 7.81 | 22.78 | 809 | -- | -- |
| 30.44 | 0.258 | 11.8 | 0.0622 | -- | -- | -- | -- | 0.0538 | -- | -- | -- | -- | -- |
| 19.33 | 0.206 | 11.8 | -- | 0.451 | -- | -- | -- | 0.042 | 8.16 | -- | -- | -- | -- |
| 19.82 | 0.207 | 11.8 | -- | -- | -0.602 | -- | -- | 0.0987 | -- | 24 | 678 | -- | -- |
| 30.54 | 0.258 | 11.8 | -- | -- | -- | -- | -- | 0.0469 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 3 | 13.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 4 | 13.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 5 | 13.72 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 6 | 13.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 19 | 13.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 39 | 13.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 45 | 13.87 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 46 | 13.87 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 52 | 13.89 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 94 | 13.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 96 | 13.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 139 | 14.04 | temperature | 25 | 1440 | > th | dose independent | sin | 15 | NA |
| 154 | 14.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 13 |
| 159 | 14.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 181 | 14.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 183 | 14.08 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 187 | 14.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 188 | 14.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 190 | 14.09 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 194 | 14.09 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 266 | 14.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 281 | 14.15 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 21 |
| 282 | 14.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 287 | 14.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 300 | 14.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 350 | 14.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 359 | 14.19 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 415 | 14.21 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 417 | 14.21 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 468 | 14.23 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 507 | 14.24 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 694 | 14.30 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 20 |
| 743 | 14.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 958 | 14.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 17 |