BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0182700 Os05g0182700|AK065911
(286 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0182700 Protein of unknown function DUF1664 family pro... 547 e-156
Os01g0185100 268 4e-72
Os09g0482740 Protein of unknown function DUF1664 family pro... 215 4e-56
Os01g0100800 Protein of unknown function DUF1664 family pro... 102 4e-22
Os05g0103700 Protein of unknown function DUF1664 family pro... 100 2e-21
>Os05g0182700 Protein of unknown function DUF1664 family protein
Length = 286
Score = 547 bits (1409), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/286 (95%), Positives = 272/286 (95%)
Query: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADM 60
MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEIL ADM
Sbjct: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILDKGEKGKDGEGGGGADM 60
Query: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI
Sbjct: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
Query: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR
Sbjct: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
Query: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP 240
DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP
Sbjct: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP 240
Query: 241 ERLEGSKMAGKRFGSQNLIQGLQLAIETGNFDKETFNALKNNSDSR 286
ERLEGSKMAGKRFGSQNLIQGLQLAIETGNFDKETFNALKNNSDSR
Sbjct: 241 ERLEGSKMAGKRFGSQNLIQGLQLAIETGNFDKETFNALKNNSDSR 286
>Os01g0185100
Length = 286
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 153/276 (55%), Positives = 195/276 (70%), Gaps = 14/276 (5%)
Query: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADM 60
MA+VQ GMGL RVV+L+GAGMAGSVV+R+GR ++ + LQE L +
Sbjct: 1 MALVQVGMGLGRVVLLVGAGMAGSVVIRDGRFADFVAGLQEALRDNDGGGSGSG---GGV 57
Query: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
D + V+ MEV Q+ S ++ ++ V+ LI PAA GAL YGYM WKGI
Sbjct: 58 IDQIEEAVKKATMEVNQMISQPVTVITVDPAV----VTTLIAPAAAAGALTYGYMRWKGI 113
Query: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
S A LMYVTK+NMANAV+SMTKHLEQVQ+SLAAAKRHLTQRI+ LDDKLDQQK +SGQI+
Sbjct: 114 SIASLMYVTKQNMANAVASMTKHLEQVQSSLAAAKRHLTQRIQHLDDKLDQQKQISGQIK 173
Query: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQNGGKLP 240
++VT ARLKL++IGSE++ IKQ+ GL K+DS+EAKQN+S AGVMYL +FIEQNGG+LP
Sbjct: 174 EEVTGARLKLQDIGSEMQKIKQVAHGLGGKLDSIEAKQNYSLAGVMYLVEFIEQNGGRLP 233
Query: 241 ERLEG----SKMAGKRFGSQNLIQGL--QLAIETGN 270
+E ++++G G Q +QGL LAIE+
Sbjct: 234 RSVEHLQRTARLSGIT-GDQKQLQGLGQLLAIESAT 268
>Os09g0482740 Protein of unknown function DUF1664 family protein
Length = 318
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 158/232 (68%), Gaps = 7/232 (3%)
Query: 1 MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADM 60
MAM Q G ++V++L+GAG+ S+VLRNGRLS++L ELQE++ A
Sbjct: 1 MAM-QTGFATSKVLILVGAGLTSSIVLRNGRLSDVLAELQELMKGVNQGEGSSAYDIA-- 57
Query: 61 TDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTG-VSGLIVPAATVGALGYGYMWWKG 119
L Q+RNLA EV+ L SR IT+L+G S G +S I+PAA VGA+GY YMWWKG
Sbjct: 58 --LLQSQIRNLAQEVRDLTISR-PITILSGNSDSGGSLSSYILPAAAVGAMGYCYMWWKG 114
Query: 120 ISFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQI 179
+S +D+M+VTKRNM AV SM+K L+QV ++LAA KRHL+QR+E LD K+D+Q +S I
Sbjct: 115 LSLSDVMFVTKRNMTKAVESMSKQLDQVSSALAATKRHLSQRLENLDGKMDEQVEVSKII 174
Query: 180 RDDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQF 231
R++V D + L IG +I I+Q+V GL+ K++ ++ KQ+ + AGV YLCQ
Sbjct: 175 RNEVNDVKDDLSQIGFDIAAIQQMVAGLEGKIELLDNKQDATNAGVWYLCQI 226
>Os01g0100800 Protein of unknown function DUF1664 family protein
Length = 356
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 126/235 (53%), Gaps = 14/235 (5%)
Query: 8 MGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILXXXXXXXXXXXXXXADMTDA---- 63
M L ++V++IG+G+ G++ L +G L + +++L T +
Sbjct: 1 MVLGKIVIVIGSGIVGTL-LTSGEAKIALPDFRDVLSGAFKFVTKQDKKDGPSTSSPHAA 59
Query: 64 -LTRQVRNLAMEVKQLA-SSRGSITVLNG--GSGQTGVSGLIVPAATVGALGYGYMWWKG 119
L QV +L +++ L+ S++ +I ++G G G G++ ++ GA+GY Y+ WKG
Sbjct: 60 HLLSQVNHLREDLQLLSRSNQVAIVTVDGRPGPGAYGITAVVA-----GAIGYLYIRWKG 114
Query: 120 ISFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQI 179
+DLM+VTKR +++A + K LE V ++ AAKRHL RI+ +D LD+ + ++
Sbjct: 115 WKLSDLMFVTKRGLSDACDVVGKQLEHVSENVNAAKRHLAGRIDHVDCTLDECQEITEST 174
Query: 180 RDDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQ 234
R +VT + E++++ +V L+ K+ + Q+ + G+ LC+F ++
Sbjct: 175 RKEVTVIHEDISAFQEEMQSVHLVVRTLETKLGRLSYTQDRTARGIYDLCEFTKR 229
>Os05g0103700 Protein of unknown function DUF1664 family protein
Length = 366
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 12/234 (5%)
Query: 8 MGLTRVVVLIGAGMAGSVVLR-NGRLS---EILGELQEILXXXXXXXXXXXXXXADMTDA 63
M L V +L+G+G+ GSV++ + +L E+L + + T
Sbjct: 1 MVLGNVAILVGSGILGSVLVGGDAKLPSAGEVLSGAAKFVKKHGNEGKDTSSNTDTHTAQ 60
Query: 64 LTRQVRNLAMEVKQLASSRGSITVLNG---GSGQTGVSGLIVPAATVGALGYGYMWWKGI 120
L QV +L E++ L S R V N G G ++ ++V GA+GY Y+ WKG
Sbjct: 61 LLSQVNHLRQEIQSLGS-RPVTVVTNAARSGPGTFTITAVVV----AGAVGYAYIKWKGW 115
Query: 121 SFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQRIERLDDKLDQQKALSGQIR 180
+DLM+VTKR +++A + + L++V + +A++HL RI+R+D LD+ + + R
Sbjct: 116 KLSDLMFVTKRGLSDACNVVGSQLDKVSDDVTSARKHLAGRIDRVDISLDETQEIIEGTR 175
Query: 181 DDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQNFSCAGVMYLCQFIEQ 234
D+VT L +++++ +V L+ K+ S+E Q+ + G+ L +F ++
Sbjct: 176 DEVTVIHGDLSAFQEDLQSVNLVVRSLESKLVSLEYTQDHTANGISDLVEFTQK 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,056,420
Number of extensions: 299315
Number of successful extensions: 961
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 5
Length of query: 286
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 186
Effective length of database: 11,814,401
Effective search space: 2197478586
Effective search space used: 2197478586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)