BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0182600 Os05g0182600|AK102592
         (640 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0182600  Similar to SSRP1 protein                           1166   0.0  
Os01g0184900  Similar to SSRP1 protein                           1007   0.0  

>Os05g0182600 Similar to SSRP1 protein
          Length = 640

 Score = 1166 bits (3017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/640 (89%), Positives = 575/640 (89%)

Query: 1   MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY 60
           MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY
Sbjct: 1   MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY 60

Query: 61  QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS 120
           QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS
Sbjct: 61  QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS 120

Query: 121 FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP 180
           FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP
Sbjct: 121 FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP 180

Query: 181 GDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAND 240
           GDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAND
Sbjct: 181 GDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAND 240

Query: 241 FKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSD 300
           FKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSD
Sbjct: 241 FKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSD 300

Query: 301 EVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGL 360
           EVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGL
Sbjct: 301 EVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGL 360

Query: 361 LYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI 420
           LYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI
Sbjct: 361 LYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI 420

Query: 421 QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGXXXX 480
           QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTG    
Sbjct: 421 QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGDDES 480

Query: 481 XXXXXXFVADKDDSGSPTDDSGEEGSDXXXXXXXXXXXXXXXXXXXXXXXXXRKPKGGDA 540
                 FVADKDDSGSPTDDSGEEGSD                         RKPKGGDA
Sbjct: 481 DEEDEDFVADKDDSGSPTDDSGEEGSDASLSGGEKEKSSKKEASSSKAPLKKRKPKGGDA 540

Query: 541 AEGSEXXXXXXXXXXXXXXXXIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMT 600
           AEGSE                IAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMT
Sbjct: 541 AEGSEKRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMT 600

Query: 601 AEEKQPYVEQSQVDKKXXXXXXXXXXXXXXMDVDSGPASD 640
           AEEKQPYVEQSQVDKK              MDVDSGPASD
Sbjct: 601 AEEKQPYVEQSQVDKKRYAEESAAYRGAAAMDVDSGPASD 640



>Os01g0184900 Similar to SSRP1 protein
          Length = 641

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/636 (77%), Positives = 535/636 (84%), Gaps = 2/636 (0%)

Query: 1   MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY 60
           MTDGH FNNI LGGR G+NPGQFK+YSGGLAWKRQGGGKTIE+EKSD+TSVTWM +PR+Y
Sbjct: 1   MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAY 60

Query: 61  QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS 120
           QLGV TK+GLFY+F GFREQD+SSLTNFM+KNM ++P+EKQLSV G NWGGI+INGNML+
Sbjct: 61  QLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLT 120

Query: 121 FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP 180
           F VGSK+AFEVSLADV+QTQMQGKTDV+LEFHVDDTTGGNEKDSLMDLSFHVPTSNTQF 
Sbjct: 121 FMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFL 180

Query: 181 GDENRPSAQVLWQAILNKADVGSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAND 240
           GDENR +AQVLW+ I+  ADV SSEEAVVTF+GIAILTPRGRYSVELHLSFLRLQGQAND
Sbjct: 181 GDENRTAAQVLWETIMGVADVDSSEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND 240

Query: 241 FKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLSD 300
           FKIQYSSI+RLF+LPKSNNPHTFVV+TLDPPIRKGQTLYPHIVIQFETEAVV+R+L L+ 
Sbjct: 241 FKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALTK 300

Query: 301 EVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDGL 360
           EVLAEKYKDRLE SY+GLIHEVF+KVLRGLSGAKVTRP +FRSCQDGYAVKSSLKAEDGL
Sbjct: 301 EVLAEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDGL 360

Query: 361 LYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI 420
           LYPLEKGFFFLPKPPTLILHEEIE+VEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI
Sbjct: 361 LYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRNI 420

Query: 421 QRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRNQTGXXXX 480
           QR+EYHNLFNFI+GKHLKI+NLG+ QG  GGVTAVL+ TDDDAVDPHLERI+NQ G    
Sbjct: 421 QRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDTDDDAVDPHLERIKNQAGDEES 480

Query: 481 XXXXXXFVADKDDSGSPTDDSGEEGSDXXXXXXXXXXXXXXXXXXXXXXXXXRKPKGGDA 540
                 FVADKDDSGSPTDDSG E SD                         RKPKG D 
Sbjct: 481 DEEDEDFVADKDDSGSPTDDSGGEDSD-ASESGGEKEKLSKKEASSSKPPVKRKPKGRD- 538

Query: 541 AEGSEXXXXXXXXXXXXXXXXIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMT 600
            EGS+                + PFMYFS AER N+KN+NP+L TTEIAKKLGE WQKMT
Sbjct: 539 EEGSDKRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMT 598

Query: 601 AEEKQPYVEQSQVDKKXXXXXXXXXXXXXXMDVDSG 636
            EEKQPY++QSQVDKK              MDVDSG
Sbjct: 599 GEEKQPYIQQSQVDKKRYEKESAVYRGAAAMDVDSG 634



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,978,004
Number of extensions: 856336
Number of successful extensions: 1485
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1482
Number of HSP's successfully gapped: 2
Length of query: 640
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 533
Effective length of database: 11,448,903
Effective search space: 6102265299
Effective search space used: 6102265299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)