Os01g0184900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SSRP1 protein.
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Os01g0184900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SSRP1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.17 | 0.189 | 13.2 | 0.202 | 0.477 | 0.352 | 0.127 | 0.216 | 0.178 | 2.74 | 50.08 | 4362 | -- | -- |
| 16.21 | 0.188 | 13.2 | 0.211 | 0.478 | 0.406 | 0.159 | -- | 0.173 | 2.78 | 50.36 | 4363 | -- | -- |
| 16.22 | 0.188 | 13.2 | 0.2 | 0.477 | 0.351 | -- | 0.207 | 0.178 | 2.75 | 50.21 | 4376 | -- | -- |
| 16.25 | 0.188 | 13.2 | 0.216 | 0.479 | 0.417 | -- | -- | 0.173 | 2.74 | 50.81 | 4376 | -- | -- |
| 28.87 | 0.25 | 13.2 | 0.184 | -- | 0.357 | -- | 0.693 | 0.204 | -- | 50 | 4704 | -- | -- |
| 19.51 | 0.207 | 13.1 | 0.0475 | 0.46 | -- | 0.0702 | -- | 0.222 | 2.82 | -- | -- | -- | -- |
| 19.53 | 0.207 | 13.1 | 0.0459 | 0.46 | -- | -- | -- | 0.222 | 2.82 | -- | -- | -- | -- |
| 28.86 | 0.25 | 13.1 | 0.201 | -- | 0.644 | -- | -- | 0.217 | -- | 47.25 | 4662 | -- | -- |
| 17.27 | 0.194 | 13.2 | -- | 0.468 | 0.426 | -- | -- | 0.177 | 2.73 | 50.66 | 4558 | -- | -- |
| 31.78 | 0.263 | 13.1 | 0.0655 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 19.58 | 0.207 | 13.1 | -- | 0.461 | -- | -- | -- | 0.217 | 2.82 | -- | -- | -- | -- |
| 29.07 | 0.251 | 13.1 | -- | -- | 0.384 | -- | -- | 0.23 | -- | 50 | 7590 | -- | -- |
| 31.89 | 0.264 | 13.1 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.47 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 2 | 15.55 | humidity | 80 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 6 | 15.64 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 14 | 15.70 | wind | 5 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 16 | 15.72 | wind | 1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 21 | 15.75 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 22 | 15.76 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 23 | 15.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 33 | 15.79 | humidity | 80 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 36 | 15.79 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 47 | 15.81 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 56 | 15.83 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 75 | 15.86 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 80 | 15.87 | humidity | 80 | 4320 | < th | dose dependent | sin | 8 | NA |
| 82 | 15.87 | humidity | 50 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 98 | 15.89 | humidity | 80 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 137 | 15.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 165 | 15.95 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 167 | 15.95 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 172 | 15.96 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 191 | 15.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 199 | 15.99 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 205 | 16.00 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 206 | 16.00 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 217 | 16.00 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 250 | 16.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 302 | 16.05 | humidity | 50 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 303 | 16.05 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 368 | 16.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 373 | 16.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 399 | 16.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 408 | 16.10 | humidity | 50 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 430 | 16.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 433 | 16.11 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 436 | 16.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 447 | 16.11 | wind | 1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 449 | 16.11 | humidity | 60 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 483 | 16.13 | humidity | 50 | 4320 | > th | dose independent | sin | 21 | NA |
| 486 | 16.13 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 491 | 16.13 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 497 | 16.13 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 514 | 16.14 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 549 | 16.14 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 21 |
| 553 | 16.15 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 583 | 16.15 | humidity | 50 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 592 | 16.15 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 23 |
| 654 | 16.16 | humidity | 50 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 677 | 16.17 | humidity | 50 | 4320 | > th | dose independent | no | NA | NA |
| 678 | 16.17 | humidity | 50 | 4320 | < th | dose independent | sin | 20 | NA |
| 831 | 16.18 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 858 | 16.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 870 | 16.19 | humidity | 50 | 4320 | < th | dose independent | no | NA | NA |