BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0184900 Os01g0184900|AK066832
         (641 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28730.1  | chr3:10784954-10788498 FORWARD LENGTH=647          719   0.0  

>AT3G28730.1 | chr3:10784954-10788498 FORWARD LENGTH=647
          Length = 646

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/478 (72%), Positives = 410/478 (85%), Gaps = 5/478 (1%)

Query: 1   MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAY 60
           M DGH FNNI L GR G NPG  K+ SGG+ WK+QGGGK +E+++SD+ SV+W KV ++ 
Sbjct: 1   MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60

Query: 61  QLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLT 120
           QLGV+TKDGL+YKF+GFR+QDV SL++F Q + G +PDEKQLSVSG+NWG +D++GN LT
Sbjct: 61  QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120

Query: 121 FMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFL 180
           F+VGSKQAFEVSLADVSQTQ+QGK DV LEFHVDDT G NEKDSLM++SFH+P SNTQF+
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180

Query: 181 GDENRTAAQVLWETIMGVADVDSS-EEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 239
           GDENR  +QV  +TI+ +ADV    E+AVVTFE IAILTPRGRY+VELHLSFLRLQGQAN
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240

Query: 240 DFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALT 299
           DFKIQYSS+VRLFLLPKSN PHTFVV++LDPPIRKGQT+YPHIV+QFET+ VVE  L+++
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300

Query: 300 KEVLAEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDG 359
            E++  K+KD+LE SYKGLIHEVFT VLR LSGAK+T+PG FRS QDG+AVKSSLKAEDG
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360

Query: 360 LLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
           +LYPLEKGFFFLPKPPTLILH+EI++VEFERH AGGA++  HYFDLL++LK D EHLFRN
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANM--HYFDLLIRLKTDHEHLFRN 418

Query: 420 IQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVL-RDTDDDAVDPHLERIKNQAG 476
           IQR+EYHNL+ FI+ K LKIMNLG G G   GV AVL  + DDDAVDPHL RI+NQA 
Sbjct: 419 IQRNEYHNLYTFISSKGLKIMNLG-GAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAA 475




 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 3/82 (3%)

Query: 560 MTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKE 619
           M+ FM+FS  ER N+K  +P +   E+ K LG+ W++M+ ++K+PY  ++QVDK+RY+ E
Sbjct: 566 MSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDE 625

Query: 620 SAVYRGAAAMDVDSGSGGNESD 641
            + Y+    M+VDS   GN+SD
Sbjct: 626 ISDYKNPQPMNVDS---GNDSD 644



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,888,267
Number of extensions: 542769
Number of successful extensions: 1277
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1274
Number of HSP's successfully gapped: 2
Length of query: 641
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 536
Effective length of database: 8,227,889
Effective search space: 4410148504
Effective search space used: 4410148504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)