Os05g0182600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SSRP1 protein.
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Os05g0182600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SSRP1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.13 | 0.396 | 9.11 | 1.32 | 0.708 | 0.339 | 0.231 | -1.07 | -0.0321 | 14.2 | 19.96 | 285 | -- | -- |
| 74.06 | 0.401 | 9.13 | 1.23 | 0.731 | 0.6 | 0.284 | -- | -0.0486 | 14.2 | 19.3 | 253 | -- | -- |
| 71.3 | 0.393 | 9.11 | 1.33 | 0.707 | 0.334 | -- | -1.11 | -0.0331 | 14.1 | 20 | 275 | -- | -- |
| 73.82 | 0.4 | 9.14 | 1.2 | 0.762 | 0.573 | -- | -- | -0.0483 | 14 | 19.3 | 100 | -- | -- |
| 98.99 | 0.463 | 9.12 | 1.32 | -- | 0.703 | -- | -0.424 | -0.0292 | -- | 19.1 | 1241 | -- | -- |
| 81.19 | 0.422 | 9.16 | 1.01 | 0.66 | -- | 0.511 | -- | -0.149 | 14.2 | -- | -- | -- | -- |
| 82.15 | 0.424 | 9.16 | 1.02 | 0.66 | -- | -- | -- | -0.146 | 14.1 | -- | -- | -- | -- |
| 98.27 | 0.462 | 9.13 | 1.3 | -- | 0.932 | -- | -- | -0.04 | -- | 18.63 | 1242 | -- | -- |
| 107.41 | 0.483 | 9.17 | -- | 0.69 | 0.24 | -- | -- | -0.223 | 14 | 20.3 | 85 | -- | -- |
| 108.27 | 0.486 | 9.16 | 0.994 | -- | -- | -- | -- | -0.162 | -- | -- | -- | -- | -- |
| 109.63 | 0.49 | 9.18 | -- | 0.641 | -- | -- | -- | -0.26 | 14 | -- | -- | -- | -- |
| 120.74 | 0.512 | 9.27 | -- | -- | -0.527 | -- | -- | -0.368 | -- | 18.3 | 47520 | -- | -- |
| 134.31 | 0.541 | 9.19 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.70 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 2 | 66.87 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 21 | 67.53 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 28 | 67.63 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 31 | 67.66 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 41 | 67.89 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 45 | 67.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 20 |
| 62 | 68.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 70 | 68.20 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 79 | 68.25 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 100 | 68.39 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 107 | 68.41 | wind | 3.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 121 | 68.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 122 | 68.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 126 | 68.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 128 | 68.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 130 | 68.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 134 | 68.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 152 | 68.59 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 160 | 68.62 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 164 | 68.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 190 | 68.73 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 226 | 68.86 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 227 | 68.86 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 232 | 68.89 | wind | 9.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 234 | 68.90 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 235 | 68.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 245 | 68.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 277 | 68.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 302 | 69.05 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 312 | 69.07 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 323 | 69.09 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 371 | 69.21 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 9 |
| 382 | 69.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 397 | 69.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 414 | 69.29 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 422 | 69.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 441 | 69.34 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 514 | 69.46 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 517 | 69.47 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 524 | 69.48 | wind | 3.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 550 | 69.52 | wind | 3.0 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 555 | 69.53 | temperature | 20.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 559 | 69.53 | wind | 3.0 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 563 | 69.54 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 578 | 69.56 | wind | 3.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 600 | 69.59 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 608 | 69.60 | temperature | 20.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 642 | 69.63 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 648 | 69.64 | wind | 3.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 700 | 69.69 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 767 | 69.75 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 770 | 69.76 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 777 | 69.77 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 783 | 69.77 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 815 | 69.80 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 822 | 69.81 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 826 | 69.82 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 848 | 69.84 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 857 | 69.84 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 885 | 69.86 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 901 | 69.87 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 924 | 69.89 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 953 | 69.91 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 965 | 69.91 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 977 | 69.92 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 11 |