BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0181800 Os05g0181800|AK066089
         (174 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0181800  Conserved hypothetical protein                      281   2e-76
Os05g0181300  Conserved hypothetical protein                      119   1e-27

>Os05g0181800 Conserved hypothetical protein
          Length = 174

 Score =  281 bits (718), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 141/174 (81%), Positives = 141/174 (81%)

Query: 1   MATNNPVSLKAEEQKCYGGGGGRVIQAITMLXXXXXXXXXXXXXXXEPWDLAFVLFAYAD 60
           MATNNPVSLKAEEQKCYGGGGGRVIQAITML               EPWDLAFVLFAYAD
Sbjct: 1   MATNNPVSLKAEEQKCYGGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAFVLFAYAD 60

Query: 61  LGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAVWALSTALSVAFXXXXXXXX 120
           LGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAVWALSTALSVAF        
Sbjct: 61  LGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAVWALSTALSVAFAWRVAAVM 120

Query: 121 XXXXXXXXXXGMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV 174
                     GMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV
Sbjct: 121 PAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV 174



>Os05g0181300 Conserved hypothetical protein
          Length = 105

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 76/108 (70%), Gaps = 6/108 (5%)

Query: 70  MYERLPPPLEEIQKGDSGDDGAAVRR---RLKMAVWALSTALSVAFXXXXXXXXXXXXXX 126
           MYERLPP LE+ + GD  DD AAVRR    LKMAVWALSTALS AF              
Sbjct: 1   MYERLPP-LEQEEDGD--DDSAAVRRRRRSLKMAVWALSTALSAAFAWRVAAVMPAPAMK 57

Query: 127 XXXXGMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV 174
               GMTSTVAVAGFYLLFV+RP  ISSYSE+DTCKH+Q+S KLDQ++
Sbjct: 58  AAVWGMTSTVAVAGFYLLFVHRPAAISSYSELDTCKHEQASSKLDQIL 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,142,940
Number of extensions: 151077
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)