BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0176300 Os05g0176300|J100059O08
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0176300  Conserved hypothetical protein                      200   1e-52
Os01g0174100  Conserved hypothetical protein                       88   1e-18

>Os05g0176300 Conserved hypothetical protein
          Length = 99

 Score =  200 bits (509), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  DGRLMSEDQNQSDQRATGDAEAGSLESKELRHSRSVGSSIKVQRRCSDSVERSRSGNQAF 60
          DGRLMSEDQNQSDQRATGDAEAGSLESKELRHSRSVGSSIKVQRRCSDSVERSRSGNQAF
Sbjct: 1  DGRLMSEDQNQSDQRATGDAEAGSLESKELRHSRSVGSSIKVQRRCSDSVERSRSGNQAF 60

Query: 61 RTRHVPPAMDPPSPKVSRCLFCGIFSKEEPSQPPKPRRY 99
          RTRHVPPAMDPPSPKVSRCLFCGIFSKEEPSQPPKPRRY
Sbjct: 61 RTRHVPPAMDPPSPKVSRCLFCGIFSKEEPSQPPKPRRY 99



>Os01g0174100 Conserved hypothetical protein
          Length = 111

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 63/100 (63%), Gaps = 11/100 (11%)

Query: 1   DGRLMSEDQNQSDQRATGDAEAGSLESKELRHSRSVGSSIKVQRRCSDSVERSRSGN-QA 59
           D RLM +  ++ DQ      E G+LE   LRHSRSVG  I +QRR  D    +R  N QA
Sbjct: 22  DERLMLDGHSERDQ------EDGALE---LRHSRSVGL-IGLQRRHGDGAGHTRCNNSQA 71

Query: 60  FRTRHVPPAMDPPSPKVSRCLFCGIFSKEEPSQPPKPRRY 99
           F TR VPPA DPPSPKV  C+FCGIF K   S+P KPRR+
Sbjct: 72  FHTRRVPPAQDPPSPKVPGCIFCGIFRKPVLSEPSKPRRF 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,057,778
Number of extensions: 161319
Number of successful extensions: 589
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 588
Number of HSP's successfully gapped: 2
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)