BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0171200 Os05g0171200|AK062702
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0171200  Embryo-specific 3 family protein                    281   2e-76
Os01g0172800  Embryo-specific 3 family protein                    168   2e-42

>Os05g0171200 Embryo-specific 3 family protein
          Length = 180

 Score =  281 bits (718), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/152 (92%), Positives = 140/152 (92%)

Query: 29  HPCHXXXXXXXXXXXXCTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGAS 88
           HPCH            CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGAS
Sbjct: 29  HPCHAATEASAAARRECTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGAS 88

Query: 89  GALDRCAVDAFRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSP 148
           GALDRCAVDAFRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSP
Sbjct: 89  GALDRCAVDAFRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSP 148

Query: 149 LPDGVWYGHNRCPKASPAMAARRTNTSASPLG 180
           LPDGVWYGHNRCPKASPAMAARRTNTSASPLG
Sbjct: 149 LPDGVWYGHNRCPKASPAMAARRTNTSASPLG 180



>Os01g0172800 Embryo-specific 3 family protein
          Length = 191

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 100/132 (75%), Gaps = 9/132 (6%)

Query: 45  CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARL------PAGGASGALDRCAVDA 98
           C YTV++KTSCASP RT+D VS+AFGDAYRNE Y ARL      P   +S A +RCA D 
Sbjct: 63  CWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGSSSSPQPSSSAAFERCATDT 122

Query: 99  FRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYGHN 158
           FRVGG CGYGVCYLYLRR+GRDGW P+WV+V+EP     + PSTFY+G PLP+ VWYG N
Sbjct: 123 FRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEP---TSDTPSTFYYGDPLPNAVWYGFN 179

Query: 159 RCPKASPAMAAR 170
           RCP+ + + AA+
Sbjct: 180 RCPRLAASAAAQ 191



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,944,369
Number of extensions: 287084
Number of successful extensions: 823
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)