Os01g0172800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Embryo-specific 3 family protein.
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Os01g0172800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Embryo-specific 3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.42 | 0.545 | 8.44 | -0.888 | 1.34 | 0.75 | 0.677 | 1.27 | -0.00509 | 9.02 | 68 | 2651 | -- | -- |
| 136.76 | 0.545 | 8.44 | -0.993 | 1.32 | 0.852 | 0.573 | -- | 0.00346 | 9.02 | 69 | 2654 | -- | -- |
| 135.97 | 0.543 | 8.44 | -0.873 | 1.34 | 0.748 | -- | 1.16 | -0.00447 | 9.01 | 68.03 | 2657 | -- | -- |
| 137.83 | 0.547 | 8.45 | -0.998 | 1.33 | 0.842 | -- | -- | -0.0292 | 9.01 | 69 | 2653 | -- | -- |
| 230.41 | 0.707 | 8.46 | -0.839 | -- | 0.829 | -- | 0.49 | -0.0191 | -- | 72.85 | 2897 | -- | -- |
| 159.18 | 0.591 | 8.46 | -0.902 | 1.28 | -- | 0.514 | -- | -0.0343 | 8.66 | -- | -- | -- | -- |
| 160.04 | 0.592 | 8.46 | -0.885 | 1.28 | -- | -- | -- | -0.0342 | 8.67 | -- | -- | -- | -- |
| 228.88 | 0.705 | 8.51 | -0.898 | -- | 0.991 | -- | -- | -0.14 | -- | 72.03 | 2932 | -- | -- |
| 149.5 | 0.569 | 8.44 | -- | 1.2 | 1.07 | -- | -- | -0.104 | 9.03 | 66 | 15695 | -- | -- |
| 252.02 | 0.742 | 8.49 | -0.882 | -- | -- | -- | -- | -0.0233 | -- | -- | -- | -- | -- |
| 180.67 | 0.629 | 8.44 | -- | 1.27 | -- | -- | -- | 0.0644 | 8.72 | -- | -- | -- | -- |
| 239.7 | 0.721 | 8.48 | -- | -- | 1.19 | -- | -- | -0.0337 | -- | 65 | 20183 | -- | -- |
| 272.52 | 0.771 | 8.47 | -- | -- | -- | -- | -- | 0.0745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.63 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 2 | 130.39 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 4 | 130.68 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 22 | 131.68 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 26 | 131.80 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 38 | 131.87 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 42 | 131.88 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 50 | 132.04 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 51 | 132.11 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 79 | 132.69 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 82 | 132.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 115 | 132.86 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 118 | 132.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 122 | 132.88 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 126 | 132.89 | humidity | 70.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 138 | 132.95 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 164 | 133.08 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 197 | 133.20 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 223 | 133.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 224 | 133.30 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 225 | 133.30 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 251 | 133.39 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 254 | 133.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 256 | 133.40 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 281 | 133.43 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 294 | 133.46 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 295 | 133.47 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 300 | 133.49 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 302 | 133.49 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 306 | 133.50 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 318 | 133.53 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 391 | 133.61 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 396 | 133.63 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 465 | 133.71 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 521 | 133.77 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 16 |
| 523 | 133.77 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 16 |
| 526 | 133.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 554 | 133.81 | humidity | 60.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 588 | 133.83 | humidity | 70.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 652 | 133.91 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 658 | 133.92 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 662 | 133.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 20 |
| 677 | 133.94 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 700 | 133.98 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 706 | 133.99 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 709 | 134.00 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 711 | 134.00 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 11 |
| 717 | 134.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 20 |
| 719 | 134.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 780 | 134.03 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 851 | 134.07 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 879 | 134.09 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 943 | 134.11 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 961 | 134.13 | temperature | 30.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 962 | 134.13 | humidity | 70.0 | 14400 | < th | dose independent | no | NA | NA |