BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0172800 Os01g0172800|AK067273
(191 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41475.1 | chr2:17295259-17296329 REVERSE LENGTH=180 123 6e-29
AT5G62200.1 | chr5:24984463-24985674 REVERSE LENGTH=191 116 6e-27
AT5G62210.1 | chr5:24986521-24987477 REVERSE LENGTH=224 93 1e-19
AT5G07190.1 | chr5:2237610-2238488 FORWARD LENGTH=214 88 3e-18
>AT2G41475.1 | chr2:17295259-17296329 REVERSE LENGTH=180
Length = 179
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 80/129 (62%), Gaps = 8/129 (6%)
Query: 63 CWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCATDT 122
C YTV IKTSC+S T D +S++FGD Y NEVY RL FE+C++DT
Sbjct: 48 CSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLDDPSSR-------TFEKCSSDT 100
Query: 123 FRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNRCP 182
+++ GPC VCYLYL R G DGW P+ V++Y +S TFYY LPN+VWYGFN C
Sbjct: 101 YKISGPCMRDVCYLYLLRQGSDGWKPENVKIYG-SSIRSVTFYYNLFLPNSVWYGFNVCN 159
Query: 183 RLAASAAAQ 191
+ + ++Q
Sbjct: 160 GIGNTKSSQ 168
>AT5G62200.1 | chr5:24984463-24985674 REVERSE LENGTH=191
Length = 190
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 61 RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCAT 120
TC YTV I TSC+S T D +S+AFGD Y N++YA RL FE+C++
Sbjct: 46 NTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLDDPST-------KTFEQCSS 98
Query: 121 DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR 180
DTF++ GPC Y +CY+YL RSG DGW P V++Y S TF Y +P +VWYGFN
Sbjct: 99 DTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKA-VTFPYNTYVPESVWYGFNY 157
Query: 181 C 181
C
Sbjct: 158 C 158
>AT5G62210.1 | chr5:24986521-24987477 REVERSE LENGTH=224
Length = 223
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 61 RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCAT 120
+C YTV + TSC SP + D V++A GDA N+V A RL FE+C++
Sbjct: 38 ESCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRL-----DKPLSGGGGFEKCSS 92
Query: 121 DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR 180
DTF+V G C +C +Y+ RSG DGW P+ V +Y+ S + F + +P +WYG N
Sbjct: 93 DTFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGSKS-VKFDFNKNVPENIWYGNNY 151
Query: 181 C 181
C
Sbjct: 152 C 152
>AT5G07190.1 | chr5:2237610-2238488 FORWARD LENGTH=214
Length = 213
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 62 TCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCATD 121
TC YTV + TSC SP T D +S+ FGDA N+VYA +L G +C+T+
Sbjct: 33 TCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG-----LVRGPGGLGKCSTN 87
Query: 122 TFRVGGPC-GYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNA-VWYGFN 179
TF+V G C +C LY+ R+G DGW P+ + +Y S + F + +P WYG N
Sbjct: 88 TFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEGSKS-VKFDFSKSVPQLNTWYGHN 146
Query: 180 RC 181
C
Sbjct: 147 NC 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,883,274
Number of extensions: 109408
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 4
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)