BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0172800 Os01g0172800|AK067273
         (191 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0172800  Embryo-specific 3 family protein                    246   5e-66
Os05g0171200  Embryo-specific 3 family protein                    169   8e-43

>Os01g0172800 Embryo-specific 3 family protein
          Length = 191

 Score =  246 bits (629), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 121/131 (92%)

Query: 61  RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCAT 120
           RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAG          AAFERCAT
Sbjct: 61  RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGSSSSPQPSSSAAFERCAT 120

Query: 121 DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR 180
           DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR
Sbjct: 121 DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR 180

Query: 181 CPRLAASAAAQ 191
           CPRLAASAAAQ
Sbjct: 181 CPRLAASAAAQ 191



>Os05g0171200 Embryo-specific 3 family protein
          Length = 180

 Score =  169 bits (429), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 98/134 (73%), Gaps = 9/134 (6%)

Query: 61  RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGXXXXXXXXXXAAFERCAT 120
           R C YTV++KTSCASP RT+D VS+AFGDAYRNE Y ARL             A +RCA 
Sbjct: 43  RECTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLP------AGGASGALDRCAV 96

Query: 121 DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEP---TSDTPSTFYYGDPLPNAVWYG 177
           D FRVGG CGYGVCYLYLRR+GRDGW P+WV+V+EP     + PSTFY+G PLP+ VWYG
Sbjct: 97  DAFRVGGQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYG 156

Query: 178 FNRCPRLAASAAAQ 191
            NRCP+ + + AA+
Sbjct: 157 HNRCPKASPAMAAR 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,876,504
Number of extensions: 197096
Number of successful extensions: 480
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 153 (63.5 bits)