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Os05g0171200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Embryo-specific 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.23 (0.0427) R2 : 0.66
β1 : -1.84 (0.176) R2dD : 0.114 R2D : -0.0779
β2 : 2.43 (0.103) R2dC : 0.428 R2C : 0.316
β3 : -4.01 (0.196) R2dE : 0.444 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.263 (0.0965) R2dN8 : 0.00844 R2N8 : -0.034
σ : 0.784
deviance : 283.07
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C
peak time of C : 9.96
E
wheather : temperature
threshold : 57.6
memory length : 4360
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.37
open length of G : 5.11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
283.23 0.791 8.23 -1.79 2.38 -3.94 -0.277 -0.256 -0.248 10.1 45.98 4373 5.32 5.06
282.94 0.783 8.24 -1.87 2.42 -4 -0.224 -- -0.265 9.99 53.14 4366 5.32 5.12
283.15 0.784 8.23 -1.8 2.42 -3.98 -- -0.225 -0.248 9.98 53.81 4365 5.29 5.14
283.07 0.784 8.23 -1.84 2.43 -4.01 -- -- -0.263 9.96 57.6 4360 5.37 5.11
374.34 0.901 8.13 -1.4 -- -5.12 -- -3.28 -0.0175 -- 52.7 6736 9.33 10.4
541.18 1.09 8.07 -0.0673 2.11 -- -0.531 -- 0.483 10.2 -- -- -- --
542.23 1.09 8.08 -0.0896 2.12 -- -- -- 0.48 10.1 -- -- -- --
310.27 0.82 8.32 -1.66 -- -5.72 -- -- -0.233 -- 76.74 6731 9.15 10.7
350.12 0.871 8.18 -- 2.36 -3.04 -- -- 0.0661 9.88 59.66 4368 4.93 4.63
812.75 1.33 8.13 -0.118 -- -- -- -- 0.478 -- -- -- -- --
542.44 1.09 8.07 -- 2.12 -- -- -- 0.49 10.1 -- -- -- --
375.67 0.903 8.22 -- -- -5.01 -- -- 0.0802 -- 87.86 6746 9.28 10
813.11 1.33 8.13 -- -- -- -- -- 0.491 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.32 temperature 30 14400 < th dose dependent rect. 6 1
2 286.47 temperature 10 14400 > th dose dependent rect. 6 1
3 286.57 temperature 10 14400 > th dose dependent rect. 21 1
4 286.59 temperature 30 14400 < th dose dependent rect. 21 1
7 287.58 temperature 30 14400 < th dose dependent rect. 4 4
9 287.63 temperature 10 14400 > th dose dependent rect. 4 4
13 287.96 temperature 10 14400 > th dose dependent rect. 19 15
17 288.02 temperature 30 14400 < th dose dependent rect. 19 14
71 288.72 temperature 10 14400 > th dose dependent sin 10 NA
76 288.75 temperature 10 14400 > th dose dependent rect. 19 7
81 288.81 temperature 30 14400 < th dose dependent rect. 19 7
149 289.34 temperature 30 14400 < th dose dependent sin 10 NA
484 291.84 temperature 10 14400 > th dose dependent no NA NA
489 291.86 temperature 10 14400 > th dose dependent rect. 24 23
513 292.02 temperature 25 14400 < th dose independent rect. 14 17
533 292.13 temperature 10 14400 > th dose dependent rect. 3 23
554 292.25 temperature 25 14400 < th dose independent rect. 15 12
558 292.27 temperature 25 14400 < th dose independent sin 14 NA
640 292.63 temperature 10 14400 > th dose dependent rect. 1 1
651 292.68 temperature 25 14400 > th dose independent rect. 16 9
660 292.72 temperature 25 14400 > th dose independent rect. 15 11
682 292.80 temperature 30 14400 < th dose dependent rect. 1 1
690 292.83 temperature 25 14400 < th dose independent rect. 19 5
696 292.87 temperature 25 14400 > th dose independent rect. 20 4
761 293.16 temperature 25 14400 > th dose independent sin 14 NA
770 293.18 temperature 25 14400 > th dose independent rect. 15 16
853 293.53 temperature 25 14400 > th dose independent rect. 20 2