BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0171200 Os05g0171200|AK062702
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41475.1  | chr2:17295259-17296329 REVERSE LENGTH=180          110   4e-25
AT5G62200.1  | chr5:24984463-24985674 REVERSE LENGTH=191          107   3e-24
AT5G62210.1  | chr5:24986521-24987477 REVERSE LENGTH=224           98   2e-21
AT5G07190.1  | chr5:2237610-2238488 FORWARD LENGTH=214             93   6e-20

>AT2G41475.1 | chr2:17295259-17296329 REVERSE LENGTH=180
          Length = 179

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 5/133 (3%)

Query: 45  CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGASGALDRCAVDAFRVGGQ 104
           C+YTV +KTSC+S + T D +S++FGD Y NE Y  RL    +S   ++C+ D +++ G 
Sbjct: 48  CSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKRLD-DPSSRTFEKCSSDTYKISGP 106

Query: 105 CGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYGHNRCPKAS 164
           C   VCYLYL R G DGW PE V+++     +  +  TFY+   LP+ VWYG N C    
Sbjct: 107 CMRDVCYLYLLRQGSDGWKPENVKIY----GSSIRSVTFYYNLFLPNSVWYGFNVCNGIG 162

Query: 165 PAMAARRTNTSAS 177
              +++  +T++S
Sbjct: 163 NTKSSQPISTTSS 175



>AT5G62200.1 | chr5:24984463-24985674 REVERSE LENGTH=191
          Length = 190

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 9/132 (6%)

Query: 45  CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGASGALDRCAVDAFRVGGQ 104
           C YTV + TSC+S   T D +SVAFGD Y N+ Y  RL    ++   ++C+ D F++ G 
Sbjct: 48  CAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPRLD-DPSTKTFEQCSSDTFQINGP 106

Query: 105 CGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYGHNRCPKAS 164
           C Y +CY+YL R+G DGW P  V+++    + G K  TF + + +P+ VWYG N C  AS
Sbjct: 107 CTYQICYVYLYRSGPDGWIPNTVKIY----SHGSKAVTFPYNTYVPESVWYGFNYCNSAS 162

Query: 165 P----AMAARRT 172
                A+  RR+
Sbjct: 163 DSNVLAIGLRRS 174



>AT5G62210.1 | chr5:24986521-24987477 REVERSE LENGTH=224
          Length = 223

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 7/118 (5%)

Query: 45  CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARL--PAGGASGALDRCAVDAFRVG 102
           C YTV V TSC SP  + D V++A GDA  N+    RL  P  G  G  ++C+ D F+V 
Sbjct: 40  CPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRLDKPLSGG-GGFEKCSSDTFQVK 98

Query: 103 GQCGYGVCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPDGVWYGHNRC 160
           G+C   +C +Y+ R+G DGW PE V++++ G+    K   F F   +P+ +WYG+N C
Sbjct: 99  GKCLNTICSVYIYRSGTDGWIPETVEIYKEGS----KSVKFDFNKNVPENIWYGNNYC 152



>AT5G07190.1 | chr5:2237610-2238488 FORWARD LENGTH=214
          Length = 213

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 11/121 (9%)

Query: 45  CTYTVRVKTSCASPARTADIVSVAFGDAYRNEAYGARLPAGGAS---GALDRCAVDAFRV 101
           C YTV V TSC SP  T D +S+ FGDA  N+ Y  +L  GG     G L +C+ + F+V
Sbjct: 34  CPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKL--GGLVRGPGGLGKCSTNTFQV 91

Query: 102 GGQCGYG-VCYLYLRRAGRDGWAPEWVQVFEPGAAAGEKPSTFYFGSPLPD-GVWYGHNR 159
            GQC    +C LY+ R G DGW PE ++++    + G K   F F   +P    WYGHN 
Sbjct: 92  RGQCLNDPICSLYINRNGPDGWVPESIEIY----SEGSKSVKFDFSKSVPQLNTWYGHNN 147

Query: 160 C 160
           C
Sbjct: 148 C 148



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,290,820
Number of extensions: 138083
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 4
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)