BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0160300 Os05g0160300|J100083F19
         (117 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0160300  Plant lipid transfer protein/Par allergen fami...   130   2e-31
Os04g0415800  Plant lipid transfer/seed storage/trypsin-alph...   110   2e-25
Os01g0849000  Plant lipid transfer protein/Par allergen fami...    99   9e-22
Os04g0415900  Plant lipid transfer/seed storage/trypsin-alph...    92   6e-20

>Os05g0160300 Plant lipid transfer protein/Par allergen family protein
          Length = 117

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 67/84 (79%)

Query: 34  SADRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIGQSPSCLCAVMLSNTARVAGIKPEVA 93
           SADRVALRLAPCV                 VHTIGQSPSCLCAVMLSNTARVAGIKPEVA
Sbjct: 34  SADRVALRLAPCVSAADDPQSAPSSSCCSAVHTIGQSPSCLCAVMLSNTARVAGIKPEVA 93

Query: 94  ITIPKRCNMADRPVGYKCGDYTLP 117
           ITIPKRCNMADRPVGYKCGDYTLP
Sbjct: 94  ITIPKRCNMADRPVGYKCGDYTLP 117



>Os04g0415800 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 116

 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 36  DRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIG-QSPSCLCAVMLSNTARVAGIKPEVAI 94
           D++AL+LAPC                  VHTIG QSP CLCAVMLS+T R AGIKPEVAI
Sbjct: 34  DKMALKLAPCASAAKDPKSTPSSGCCTAVHTIGKQSPKCLCAVMLSSTTRNAGIKPEVAI 93

Query: 95  TIPKRCNMADRPVGYKCGDYTLP 117
           TIPKRCN+ADRPVGYKCGDYTLP
Sbjct: 94  TIPKRCNIADRPVGYKCGDYTLP 116



>Os01g0849000 Plant lipid transfer protein/Par allergen family protein
          Length = 118

 Score = 98.6 bits (244), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 58/82 (70%)

Query: 36  DRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIGQSPSCLCAVMLSNTARVAGIKPEVAIT 95
           D+VAL+LAPC                  V +IG++P CLCAVMLSNTAR AG+KP VA+T
Sbjct: 37  DQVALKLAPCAAATQNPRAAVPPNCCAQVRSIGRNPKCLCAVMLSNTARSAGVKPAVAMT 96

Query: 96  IPKRCNMADRPVGYKCGDYTLP 117
           IPKRC +A+RP+GYKCG YTLP
Sbjct: 97  IPKRCAIANRPIGYKCGPYTLP 118



>Os04g0415900 Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor
           domain containing protein
          Length = 123

 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 58/85 (68%), Gaps = 2/85 (2%)

Query: 35  ADRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIG--QSPSCLCAVMLSNTARVAGIKPEV 92
           A++VAL+LAPC                  V  IG  QS +CLCAV+LS+T R +G+KPEV
Sbjct: 35  AEKVALKLAPCAKAAQDPGARPPAACCAAVRDIGTHQSHACLCAVLLSSTVRRSGVKPEV 94

Query: 93  AITIPKRCNMADRPVGYKCGDYTLP 117
           AITIPKRC +A+RPVGYKCG YTLP
Sbjct: 95  AITIPKRCKLANRPVGYKCGAYTLP 119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,157,452
Number of extensions: 57250
Number of successful extensions: 121
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 4
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)