Os05g0160300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant lipid transfer protein/Par allergen family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0160300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Plant lipid transfer protein/Par allergen family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 470.49 | 1.02 | 11.4 | -7.64 | 2.78 | 3.98 | 2.34 | -10.4 | -0.828 | 13.7 | 24.88 | 1449 | 15.4 | 1.74 |
| 521.98 | 1.06 | 11.1 | -4.71 | 2.76 | 3.22 | 1.77 | -- | -0.422 | 13.6 | 23.61 | 1463 | 16.8 | 1.87 |
| 489.76 | 1.03 | 11.4 | -7.48 | 2.8 | 3.97 | -- | -9.99 | -0.852 | 13.7 | 24.29 | 1446 | 15.3 | 1.98 |
| 544.69 | 1.09 | 11.1 | -4.62 | 2.81 | 3.1 | -- | -- | -0.396 | 13.6 | 23.55 | 1461 | 16.8 | 2.26 |
| 942.78 | 1.43 | 11.4 | -7.2 | -- | 4.14 | -- | -9.96 | -0.956 | -- | 23.08 | 1495 | 15.4 | 2.23 |
| 928.13 | 1.43 | 11 | -3.83 | 2.64 | -- | 2.21 | -- | 0.0408 | 13.6 | -- | -- | -- | -- |
| 947.47 | 1.44 | 11 | -3.76 | 2.65 | -- | -- | -- | 0.0539 | 13.7 | -- | -- | -- | -- |
| 982.57 | 1.46 | 11.1 | -5.21 | -- | 4.59 | -- | -- | -0.442 | -- | 17.9 | 1555 | 14.8 | 3.97 |
| 1071.76 | 1.52 | 11 | -- | 2.84 | 3.07 | -- | -- | 0.193 | 13.5 | 24.21 | 1497 | 17.9 | 1.43 |
| 1374.23 | 1.73 | 11.1 | -3.87 | -- | -- | -- | -- | -0.00502 | -- | -- | -- | -- | -- |
| 1319.85 | 1.7 | 10.9 | -- | 2.71 | -- | -- | -- | 0.472 | 13.7 | -- | -- | -- | -- |
| 1562.23 | 1.84 | 11 | -- | -- | 3.12 | -- | -- | 0.186 | -- | 23.9 | 1510 | 17.9 | 1.15 |
| 1768.49 | 1.96 | 11 | -- | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 473.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 2 | 475.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 58 | 494.99 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 73 | 495.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 347 | 515.16 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 787 | 539.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 836 | 541.42 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |