BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0160300 Os05g0160300|J100083F19
         (117 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05960.1  | chr5:1790256-1790694 FORWARD LENGTH=117             99   7e-22
AT3G53980.1  | chr3:19987760-19988203 REVERSE LENGTH=115           93   3e-20
AT2G37870.1  | chr2:15859280-15859723 FORWARD LENGTH=116           64   2e-11

>AT5G05960.1 | chr5:1790256-1790694 FORWARD LENGTH=117
          Length = 116

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 57/82 (69%)

Query: 36  DRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIGQSPSCLCAVMLSNTARVAGIKPEVAIT 95
           DR A++LAPC                  V  +GQ+P CLCAVMLS+TAR +G KPE+++T
Sbjct: 35  DREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSSTARSSGAKPEISMT 94

Query: 96  IPKRCNMADRPVGYKCGDYTLP 117
           IPKRCN+A+RPVGYKCG YTLP
Sbjct: 95  IPKRCNIANRPVGYKCGAYTLP 116



>AT3G53980.1 | chr3:19987760-19988203 REVERSE LENGTH=115
          Length = 114

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 54/84 (64%)

Query: 34  SADRVALRLAPCVXXXXXXXXXXXXXXXXXVHTIGQSPSCLCAVMLSNTARVAGIKPEVA 93
           S D  A++LAPC                  +    Q+P CLCA++LS+TA+ +G+ PEVA
Sbjct: 31  SPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAILLSDTAKASGVDPEVA 90

Query: 94  ITIPKRCNMADRPVGYKCGDYTLP 117
           +TIPKRCN A+RPVGYKCG YTLP
Sbjct: 91  LTIPKRCNFANRPVGYKCGAYTLP 114



>AT2G37870.1 | chr2:15859280-15859723 FORWARD LENGTH=116
          Length = 115

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 67  IGQSPSCLCAVMLSNTARVAGIKPEVAITIPKRCNMADRPVGYKCGDYTLP 117
           I  +P CLCAVMLS  A+ AGI P +AI +PKRCN+ +RP G +CG Y +P
Sbjct: 65  IRTNPRCLCAVMLSPLAKKAGINPGIAIGVPKRCNIRNRPAGKRCGRYIVP 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,327,035
Number of extensions: 34839
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)