Os01g0849000 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0849000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant lipid transfer protein/Par allergen family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.89	(0.0685)	R²	:	0.663
β₁	:	-7.14	(0.264)	R²_dD	:	0.626	R²_D	:	0.336
β₂	:	1.66	(0.178)	R²_dC	:	0.0649	R²_C	:	0.0753
β₃	:	4.15	(0.283)	R²_dE	:	0.19	R²_E	:	-0.0434
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-1.3	(0.15)	R²_dN8	:	0.0784	R²_N8	:	-0.0493
σ	:	1.27
deviance	:	746.61
__

_____

C
peak time of C	:	18.9
E
wheather	:	temperature
threshold	:	19.09
memory length	:	1546
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	11.3
open length of G	:	7.88

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
737.69	1.28	7	-8.05	2.09	3.77	-0.0542	-3.71	-1.47	18.1	20.04	1410	11.1	6.82
751.74	1.28	6.94	-7.15	1.83	3.76	-0.31	--	-1.4	18.6	19.09	1476	11.1	8.08
737.68	1.26	7	-8.05	2.09	3.76	--	-3.72	-1.47	18.1	20.1	1409	11.1	6.85
746.61	1.27	6.89	-7.14	1.66	4.15	--	--	-1.3	18.9	19.09	1546	11.3	7.88
759.9	1.28	6.92	-7.66	--	5.07	--	-3.44	-1.46	--	19.18	2014	9.99	6.35
1103.7	1.56	6.77	-5.83	1.97	--	-0.214	--	-0.743	18.8	--	--	--	--
1103.82	1.56	6.77	-5.82	1.97	--	--	--	-0.743	18.8	--	--	--	--
763.13	1.29	6.85	-7.21	--	5.63	--	--	-1.38	--	16.97	1930	9.92	9.05
1932.51	2.05	6.62	--	1.16	2.28	--	--	-0.202	18.3	11.4	1800	12.5	6.52
1305.96	1.69	6.73	-5.87	--	--	--	--	-0.782	--	--	--	--	--
1998.03	2.09	6.62	--	2.04	--	--	--	-0.0947	18.6	--	--	--	--
1953.95	2.06	6.7	--	--	2.84	--	--	-0.429	--	-8.014	1780	11.3	8.58
2214.57	2.2	6.58	--	--	--	--	--	-0.131	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	739.05	temperature	20	1440	> th	dose dependent	rect.	11	7
2	739.15	temperature	20	1440	> th	dose dependent	rect.	13	1
4	739.84	temperature	20	1440	> th	dose dependent	rect.	13	5
56	748.79	temperature	20	1440	> th	dose dependent	sin	21	NA
333	759.85	temperature	25	1440	> th	dose dependent	rect.	12	21
476	762.30	humidity	60	14400	< th	dose dependent	rect.	17	15
504	762.64	humidity	60	14400	< th	dose dependent	rect.	17	5
604	763.86	humidity	50	14400	< th	dose dependent	rect.	16	19
628	764.21	temperature	25	1440	> th	dose dependent	no	NA	NA
712	766.55	humidity	60	14400	< th	dose independent	rect.	17	3
871	771.51	wind	9	43200	> th	dose independent	rect.	20	3
889	772.18	wind	9	43200	> th	dose dependent	rect.	20	3