BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0849000 Os01g0849000|AK105208
         (118 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05960.1  | chr5:1790256-1790694 FORWARD LENGTH=117            128   7e-31
AT3G53980.1  | chr3:19987760-19988203 REVERSE LENGTH=115          122   3e-29
AT2G37870.1  | chr2:15859280-15859723 FORWARD LENGTH=116          104   7e-24

>AT5G05960.1 | chr5:1790256-1790694 FORWARD LENGTH=117
          Length = 116

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 73/89 (82%)

Query: 30  ECGRVPVDQVALKLAPCAAATQNPRAAVPPNCCAQVRSIGRNPKCLCAVMLSNTARSAGV 89
           ECGR P D+ A+KLAPCA A Q+  A V   CCA+V+ +G+NPKCLCAVMLS+TARS+G 
Sbjct: 28  ECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQNPKCLCAVMLSSTARSSGA 87

Query: 90  KPAVAMTIPKRCAIANRPIGYKCGPYTLP 118
           KP ++MTIPKRC IANRP+GYKCG YTLP
Sbjct: 88  KPEISMTIPKRCNIANRPVGYKCGAYTLP 116



>AT3G53980.1 | chr3:19987760-19988203 REVERSE LENGTH=115
          Length = 114

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 69/89 (77%)

Query: 30  ECGRVPVDQVALKLAPCAAATQNPRAAVPPNCCAQVRSIGRNPKCLCAVMLSNTARSAGV 89
           ECGR   D  A+KLAPCA A Q+  +AVP  CC Q++   +NPKCLCA++LS+TA+++GV
Sbjct: 26  ECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAILLSDTAKASGV 85

Query: 90  KPAVAMTIPKRCAIANRPIGYKCGPYTLP 118
            P VA+TIPKRC  ANRP+GYKCG YTLP
Sbjct: 86  DPEVALTIPKRCNFANRPVGYKCGAYTLP 114



>AT2G37870.1 | chr2:15859280-15859723 FORWARD LENGTH=116
          Length = 115

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 1/115 (0%)

Query: 5   VRCVWFLLXXXXXXXXXXXXXXXXXECGRVPVDQVALKLAPCAAATQNPRAAVPPNCCAQ 64
           ++C  F+                  ECGR+P++Q A  L+PC  AT+NPR  VPP CCA+
Sbjct: 1   MKCCKFVAVALMSLLISLASVEAAGECGRMPINQAAASLSPCLPATKNPRGKVPPVCCAK 60

Query: 65  VRSIGR-NPKCLCAVMLSNTARSAGVKPAVAMTIPKRCAIANRPIGYKCGPYTLP 118
           V ++ R NP+CLCAVMLS  A+ AG+ P +A+ +PKRC I NRP G +CG Y +P
Sbjct: 61  VGALIRTNPRCLCAVMLSPLAKKAGINPGIAIGVPKRCNIRNRPAGKRCGRYIVP 115



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.135    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,066,321
Number of extensions: 57988
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 3
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)