BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0159100 Os05g0159100|AK103137
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0159100  Protein of unknown function DUF846, eukaryotic...   379   e-106
Os01g0331900  Protein of unknown function DUF846, eukaryotic...   304   3e-83
AK060262                                                          158   3e-39

>Os05g0159100 Protein of unknown function DUF846, eukaryotic family protein
          Length = 187

 Score =  379 bits (973), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MDRPQVVTENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVK 60
           MDRPQVVTENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVK
Sbjct: 1   MDRPQVVTENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVK 60

Query: 61  NVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILG 120
           NVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILG
Sbjct: 61  NVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILG 120

Query: 121 IFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQNAITSRITSTL 180
           IFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQNAITSRITSTL
Sbjct: 121 IFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQNAITSRITSTL 180

Query: 181 QSAFGVI 187
           QSAFGVI
Sbjct: 181 QSAFGVI 187



>Os01g0331900 Protein of unknown function DUF846, eukaryotic family protein
          Length = 183

 Score =  304 bits (778), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/186 (80%), Positives = 165/186 (88%), Gaps = 3/186 (1%)

Query: 1   MDRPQVVTENYANPVTCLFHVLFKAGALVFYILFSLFVKSFVIIFVITVFLAALDFWVVK 60
           MD+ QVV ENYANP TC FHVLFKAGAL FYIL +LFV +FVIIFVITV LAALDFWVVK
Sbjct: 1   MDQHQVVGENYANPKTCFFHVLFKAGALAFYILSALFVTNFVIIFVITVLLAALDFWVVK 60

Query: 61  NVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIILG 120
           NVSGRILVG+RWWNEIDDEGNSVWKFECLDGE+LARMNKKDSWLFWWTLYLTAAAWI+LG
Sbjct: 61  NVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLG 120

Query: 121 IFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQNAITSRITSTL 180
           IFSLIRL ADYLLVVGVCL+LS+ANIVGFT+CNKDAKKN+  +        ++S + ST+
Sbjct: 121 IFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTR---TTLLSSGVRSTI 177

Query: 181 QSAFGV 186
           QSAFGV
Sbjct: 178 QSAFGV 183



>AK060262 
          Length = 78

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 110 YLTAAAWIILGIFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQ 169
           YLTAAAWIILGIFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQ
Sbjct: 1   YLTAAAWIILGIFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIRGYFEGHAQ 60

Query: 170 NAITSRITSTLQSAFGVI 187
           NAITSRITSTLQSAFGVI
Sbjct: 61  NAITSRITSTLQSAFGVI 78



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.141    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,904,002
Number of extensions: 219604
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 3
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 153 (63.5 bits)