BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0147800 Os05g0147800|AK106485
         (391 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0147800  Conserved hypothetical protein                      677   0.0  
Os05g0147700  Cyclin-like F-box domain containing protein         190   2e-48

>Os05g0147800 Conserved hypothetical protein
          Length = 391

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/391 (91%), Positives = 356/391 (91%)

Query: 1   MAMAAATGGVDVLGDDLLREILLRLPSPAALAGRSFLRAARDAGFLRRFRARHHPSPPRL 60
           MAMAAATGGVDVLGDDLLREILLRLPSPAALAGRSFLRAARDAGFLRRFRARHHPSPPRL
Sbjct: 1   MAMAAATGGVDVLGDDLLREILLRLPSPAALAGRSFLRAARDAGFLRRFRARHHPSPPRL 60

Query: 61  LGFLFVVPGTTPPVLLSVASASGNPPAGDFSLSFLPGGGWGSAEWEXXXXXXXXXXXXHN 120
           LGFLFVVPGTTPPVLLSVASASGNPPAGDFSLSFLPGGGWGSAEWE            HN
Sbjct: 61  LGFLFVVPGTTPPVLLSVASASGNPPAGDFSLSFLPGGGWGSAEWELLDCRDGLLLLLHN 120

Query: 121 HGADMKLAVADPSRRACYPFDLPTADIPVLYGLAAAKSASFRVVCIARSLDSTTLRALVL 180
           HGADMKLAVADPSRRACYPFDLPTADIPVLYGLAAAKSASFRVVCIARSLDSTTLRALVL
Sbjct: 121 HGADMKLAVADPSRRACYPFDLPTADIPVLYGLAAAKSASFRVVCIARSLDSTTLRALVL 180

Query: 181 SSDEPYHWEEVNAIPCEEEASIVYAARPMKAKTSLYWKLDDGTRMAAFDAAPGKMKLSIL 240
           SSDEPYHWEEVNAIPCEEEASIVYAARPMKAKTSLYWKLDDGTRMAAFDAAPGKMKLSIL
Sbjct: 181 SSDEPYHWEEVNAIPCEEEASIVYAARPMKAKTSLYWKLDDGTRMAAFDAAPGKMKLSIL 240

Query: 241 DLPPFPATLAFDVIDTEDDDDGLRVLAMSDDFCLETWKLSSXXXXXXXXXXXXXXXPWTL 300
           DLPPFPATLAFDVIDTEDDDDGLRVLAMSDDFCLETWKLSS               PWTL
Sbjct: 241 DLPPFPATLAFDVIDTEDDDDGLRVLAMSDDFCLETWKLSSAATAAAIDDDEEEETPWTL 300

Query: 301 EDTSVRFYRALESMLGERKLSDXXXXXXXXGYEFEIVGVVDGFFFFRQSGVLLSIDLKTM 360
           EDTSVRFYRALESMLGERKLSD        GYEFEIVGVVDGFFFFRQSGVLLSIDLKTM
Sbjct: 301 EDTSVRFYRALESMLGERKLSDRHRRRRRRGYEFEIVGVVDGFFFFRQSGVLLSIDLKTM 360

Query: 361 ELTRLSEQDCSPATIYPYTMAWPPSFLNPTD 391
           ELTRLSEQDCSPATIYPYTMAWPPSFLNPTD
Sbjct: 361 ELTRLSEQDCSPATIYPYTMAWPPSFLNPTD 391



>Os05g0147700 Cyclin-like F-box domain containing protein
          Length = 456

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 160/404 (39%), Positives = 210/404 (51%), Gaps = 52/404 (12%)

Query: 13  LGDDLLREILLRLPSPA-----ALAGRSFLRAARDAGFLRRFRARHHPSPPRLLGFLFVV 67
           L DDLLRE+ L LP+ A     +LA + FLRAAR+AGFLRRFR RH P    LLG L   
Sbjct: 15  LSDDLLREVFLLLPTAADLVRASLACKPFLRAARNAGFLRRFRRRHGP---LLLGCLLHH 71

Query: 68  PGTTPPVLLSVASASGNPPA---GDFSLSFLPGGGWGS----AEWEXXXXXXXXXXXXHN 120
                PV +  + A+    A   GDFSLSFLP GGW      A W              N
Sbjct: 72  ADLPAPVFVPSSPAAAAAAARADGDFSLSFLPHGGWLGGGGGAPWRFLDCRNGRVLLK-N 130

Query: 121 HGADMKLAVADPSRRACYPFDLPTADIPVLYGLAA--AKSASFRVVCIARSLD-----ST 173
            G   +LAVADP   +C     P A   V YGL A    S+ FRV CIA+  D     S+
Sbjct: 131 RGTQ-ELAVADPLAWSCVSLPPPPAARAVGYGLVADDGDSSVFRVFCIAQLGDGDGGVSS 189

Query: 174 TLRALVLSSDEPYHWEEVNAIPCEEEASIVYAARPMKAKTSLYWKLDDGTRMAAFDAAPG 233
             RA+VLS  E   W +V   P     ++  A+R M+A  SLYW L+ G  + A + A  
Sbjct: 190 ETRAMVLSPGE-LSWADVAVHP--HRLNLAAASRAMQANGSLYWTLEGGASVVALNTATN 246

Query: 234 KMKLSILDLPPFPATLAFDVIDTEDDDDG------LRVLAMSDDFCLETWKLSSXXXXXX 287
           +   S+L+LPP    L+FDV++  +++DG      L +L M   FC+E W  +       
Sbjct: 247 E--FSVLELPPPLRQLSFDVVEKGEEEDGGGGGGPLYLLTMRG-FCVEVWAGAGDGGAGE 303

Query: 288 XXXXXXXXXPWTLEDTSVRFYRALESMLGERKLSDXXXXXXXXGYEFEIVGVVDGFFFFR 347
                     WT  + SVRF++A+ +ML    +           +  ++VGVV G  F R
Sbjct: 304 LT--------WTRVEKSVRFHKAM-AMLQHDSVE-------MYHHGLDVVGVVAGVLFLR 347

Query: 348 QSGVLLSIDLKTMELTRLSEQDCSPATIYPYTMAWPPSFLNPTD 391
               LLSIDL+TM+L +LS++DCS A+IYPY M WPPSFLNP +
Sbjct: 348 HWNCLLSIDLETMKLRKLSDEDCSSASIYPYAMPWPPSFLNPAE 391



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,697,868
Number of extensions: 580795
Number of successful extensions: 1791
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1796
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 288
Effective length of database: 11,657,759
Effective search space: 3357434592
Effective search space used: 3357434592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)