Os05g0147800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0147800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 384.61 | 0.921 | 3.7 | 0.796 | 1.01 | 16.2 | 0.963 | -31.6 | -0.197 | 18.9 | 9.781 | 11 | 12 | 1.17 |
| 504.24 | 1.05 | 3.49 | 1.28 | 0.801 | 12.6 | 1.89 | -- | 0.00875 | 17.5 | 9.72 | 9 | 12 | 1.81 |
| 386.81 | 0.916 | 3.7 | 0.778 | 1.01 | 16.2 | -- | -31.6 | -0.195 | 18.9 | 9.76 | 11 | 12 | 1.19 |
| 437.28 | 0.974 | 3.78 | 0.732 | 0.943 | 9.15 | -- | -- | -0.186 | 17.8 | 9.973 | 45 | 12 | 1.25 |
| 440.53 | 0.978 | 3.68 | 0.754 | -- | 16.1 | -- | -31.6 | -0.215 | -- | 9.76 | 12 | 12 | 1.21 |
| 419 | 0.96 | 3.68 | 0.91 | 1 | -- | 0.937 | -- | -0.217 | 18.7 | -- | -- | -- | -- |
| 421.22 | 0.961 | 3.68 | 0.895 | 1 | -- | -- | -- | -0.214 | 18.6 | -- | -- | -- | -- |
| 469.42 | 1.01 | 3.77 | 0.378 | -- | 6.63 | -- | -- | -0.419 | -- | 10.38 | 45 | 12 | 1.25 |
| 425.61 | 0.961 | 3.72 | -- | 0.993 | 6.61 | -- | -- | -0.309 | 19.5 | 9.759 | 30 | 12 | 0.975 |
| 473.73 | 1.02 | 3.66 | 0.872 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 442.35 | 0.984 | 3.7 | -- | 0.992 | -- | -- | -- | -0.314 | 18.7 | -- | -- | -- | -- |
| 471.45 | 1.01 | 3.68 | -- | -- | 4.41 | -- | -- | -0.306 | -- | 10.17 | 27 | 12 | 0.644 |
| 493.77 | 1.04 | 3.68 | -- | -- | -- | -- | -- | -0.331 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 387.48 | radiation | 10 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 390.36 | radiation | 10 | 30 | < th | dose independent | rect. | 11 | 1 |
| 10 | 391.79 | wind | 5 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 15 | 392.41 | wind | 5 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 27 | 393.15 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 29 | 393.30 | wind | 5 | 14400 | > th | dose independent | sin | 11 | NA |
| 51 | 393.76 | wind | 5 | 14400 | < th | dose independent | sin | 11 | NA |
| 65 | 394.11 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 83 | 394.55 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 88 | 394.64 | wind | 5 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 103 | 394.84 | wind | 5 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 121 | 395.19 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 186 | 396.13 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 190 | 396.15 | wind | 5 | 14400 | > th | dose dependent | sin | 11 | NA |
| 212 | 396.35 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 308 | 397.06 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 362 | 397.43 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 24 | 3 |
| 392 | 397.65 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 399 | 397.71 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 2 |
| 401 | 397.72 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 409 | 397.72 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 455 | 397.93 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 458 | 397.95 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 466 | 398.01 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 557 | 398.36 | wind | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 589 | 398.53 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 690 | 399.10 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 692 | 399.11 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 707 | 399.17 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 723 | 399.23 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 741 | 399.31 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 753 | 399.34 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 755 | 399.34 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 5 |
| 764 | 399.38 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 767 | 399.39 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 774 | 399.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 782 | 399.43 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 801 | 399.48 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 821 | 399.52 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 850 | 399.62 | wind | 5 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 857 | 399.65 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 870 | 399.71 | wind | 5 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 872 | 399.72 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 930 | 399.86 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 953 | 399.95 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 960 | 399.97 | wind | 9 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 998 | 400.06 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 7 |