BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0145000 Os05g0145000|AK073253
(386 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0145000 Similar to Ring finger protein (Fragment) 675 0.0
Os02g0820200 Zinc finger, RING-type domain containing protein 74 2e-13
>Os05g0145000 Similar to Ring finger protein (Fragment)
Length = 386
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/386 (86%), Positives = 335/386 (86%)
Query: 1 MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFV 60
MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFV
Sbjct: 1 MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFV 60
Query: 61 DNGLAAGMGLDLGWQQRYARFCGRIXXXXXXXXXXYPFLWVWTVIGTLWFSTARGCLPEE 120
DNGLAAGMGLDLGWQQRYARFCGRI YPFLWVWTVIGTLWFSTARGCLPEE
Sbjct: 61 DNGLAAGMGLDLGWQQRYARFCGRIVVLSVLVLLLYPFLWVWTVIGTLWFSTARGCLPEE 120
Query: 121 GQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDW 180
GQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDW
Sbjct: 121 GQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDW 180
Query: 181 AFEAVGLEMRGMGQDTAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEE 240
AFEAVGLEMRGMGQDTAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEE
Sbjct: 181 AFEAVGLEMRGMGQDTAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEE 240
Query: 241 FHVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRPSSEPDRPS 300
FHVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRPSSEPDRPS
Sbjct: 241 FHVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRPSSEPDRPS 300
Query: 301 ASEVTAATMARYVRSSQPAXXXXXXXXXXXXXXXXXXXXXXXDDMASAENXXXXXXXXXX 360
ASEVTAATMARYVRSSQPA DDMASAEN
Sbjct: 301 ASEVTAATMARYVRSSQPAGQSYLLRLQGLLLRQVVVRHGGGDDMASAENGASHVAAAVT 360
Query: 361 XXXXXXXXESELPSIVVDGGHQLPDR 386
ESELPSIVVDGGHQLPDR
Sbjct: 361 APATTGGVESELPSIVVDGGHQLPDR 386
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 197 AYHPGLYLTAAQREAVEALIQELPKFR----LKAVPTDCSECPICLEEFHVGNEVRGLP- 251
A L A R EA IQ LP FR +K D SEC +C+ EF VR LP
Sbjct: 101 AASSSLPAVAEPRGLEEAAIQSLPAFRYRKAIKDTTADSSECAVCISEFQEEERVRLLPS 160
Query: 252 CAHNFHVECIDQWLRLNVKCPRCRCSVFPN 281
C H FHV+CID WL+ N CP CR ++ N
Sbjct: 161 CLHVFHVDCIDTWLQGNANCPLCRAAIATN 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,237,572
Number of extensions: 475985
Number of successful extensions: 1638
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 11
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)