BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0140500 Os05g0140500|J100061D12
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0140500  Similar to RNA binding motif protein 8B-related     225   1e-59
Os03g0809900  Similar to RNA-binding protein 8A (Tsunagi pro...    92   1e-19

>Os05g0140500 Similar to RNA binding motif protein 8B-related
          Length = 158

 Score =  225 bits (574), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 111/123 (90%)

Query: 36  RLRSTIAXXXXXXXXXXXXQRKTKGRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPV 95
           RLRSTIA            QRKTKGRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPV
Sbjct: 36  RLRSTIAGGGGGGGGGDDGQRKTKGRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPV 95

Query: 96  RSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKVCLFQYCNVSSPV 155
           RSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKVCLFQYCNVSSPV
Sbjct: 96  RSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKVCLFQYCNVSSPV 155

Query: 156 AAL 158
           AAL
Sbjct: 156 AAL 158



>Os03g0809900 Similar to RNA-binding protein 8A (Tsunagi protein)
          Length = 197

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 3/69 (4%)

Query: 83  FDSLGSDGGPG--PVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGF 140
           FDSL   G PG  P RSIEGWI+LV+GV E+A+EDDL+N F DFG VK+LHLNL+RRTG+
Sbjct: 70  FDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGY 129

Query: 141 VK-VCLFQY 148
            K   L +Y
Sbjct: 130 AKGYALVEY 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,399,886
Number of extensions: 195325
Number of successful extensions: 579
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)