Os03g0809900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding protein 8A (Tsunagi protein).
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Os03g0809900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding protein 8A (Tsunagi protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.38 | 0.658 | 6.2 | -1.28 | 1.35 | 3.34 | 0.617 | 6.87 | 0.533 | 20.4 | 1.435 | 1485 | -- | -- |
| 198.11 | 0.656 | 6.08 | -0.657 | 1.28 | 2.74 | 1.55 | -- | 0.834 | 19.6 | 3.673 | 1546 | -- | -- |
| 195.64 | 0.651 | 6.19 | -1.18 | 1.3 | 2.9 | -- | 4.91 | 0.553 | 20.1 | 2.431 | 1508 | -- | -- |
| 203.36 | 0.664 | 6.07 | -0.666 | 1.36 | 2.72 | -- | -- | 0.777 | 19.2 | 3.662 | 1574 | -- | -- |
| 284.77 | 0.786 | 6.18 | -1.14 | -- | 3.56 | -- | 5.61 | 0.565 | -- | 2.189 | 1528 | -- | -- |
| 273.27 | 0.775 | 6.17 | -1 | 1.6 | -- | 0.962 | -- | 0.381 | 21 | -- | -- | -- | -- |
| 276.41 | 0.779 | 6.17 | -1.04 | 1.59 | -- | -- | -- | 0.379 | 21 | -- | -- | -- | -- |
| 293.62 | 0.798 | 6.03 | -0.607 | -- | 3.07 | -- | -- | 0.815 | -- | 3.548 | 1541 | -- | -- |
| 213.77 | 0.681 | 6.07 | -- | 1.36 | 3.04 | -- | -- | 0.842 | 18.8 | 3.32 | 1577 | -- | -- |
| 422.52 | 0.96 | 6.13 | -1.03 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 304.67 | 0.816 | 6.14 | -- | 1.59 | -- | -- | -- | 0.495 | 21 | -- | -- | -- | -- |
| 302.64 | 0.81 | 6.01 | -- | -- | 3.27 | -- | -- | 0.899 | -- | 3.279 | 1538 | -- | -- |
| 450.65 | 0.991 | 6.1 | -- | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.25 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 3 | 182.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 4 | 183.18 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 6 | 183.49 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 11 | 184.18 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 12 | 184.33 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 13 | 184.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 14 | 184.41 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 16 | 184.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 20 | 184.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 24 | 184.79 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 25 | 184.86 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 28 | 184.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 31 | 185.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 40 | 185.26 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 44 | 185.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 51 | 185.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 7 |
| 52 | 185.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 54 | 185.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 11 |
| 56 | 185.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 59 | 185.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 73 | 185.81 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 77 | 185.84 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 94 | 185.96 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 98 | 186.05 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 165 | 186.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 166 | 186.53 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 168 | 186.55 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 189 | 186.63 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 190 | 186.65 | temperature | 25 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 196 | 186.69 | temperature | 25 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 197 | 186.70 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 205 | 186.79 | temperature | 30 | 14400 | < th | dose independent | sin | 17 | NA |
| 208 | 186.79 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 18 |
| 209 | 186.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 248 | 186.96 | temperature | 20 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 251 | 186.98 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 257 | 187.00 | temperature | 30 | 14400 | > th | dose independent | sin | 16 | NA |
| 288 | 187.08 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 295 | 187.11 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 316 | 187.15 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 362 | 187.33 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 364 | 187.34 | temperature | 25 | 14400 | > th | dose independent | sin | 8 | NA |
| 368 | 187.36 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 378 | 187.39 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 424 | 187.47 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 578 | 187.89 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 589 | 187.93 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 613 | 187.98 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 615 | 187.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 623 | 188.00 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 642 | 188.01 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 680 | 188.06 | temperature | 25 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 706 | 188.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 711 | 188.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 18 |
| 723 | 188.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 726 | 188.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 735 | 188.12 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 739 | 188.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 813 | 188.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 856 | 188.16 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 940 | 188.29 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 949 | 188.31 | temperature | 25 | 14400 | < th | dose independent | sin | 8 | NA |
| 999 | 188.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 5 |