BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0809900 Os03g0809900|AK103277
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0809900  Similar to RNA-binding protein 8A (Tsunagi pro...   313   7e-86
Os05g0140500  Similar to RNA binding motif protein 8B-related      92   2e-19

>Os03g0809900 Similar to RNA-binding protein 8A (Tsunagi protein)
          Length = 197

 Score =  313 bits (801), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 151/161 (93%), Positives = 151/161 (93%)

Query: 37  ALPVPHIVSQGVMXXXXXXXXXXTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSG 96
           ALPVPHIVSQGVM          TSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSG
Sbjct: 37  ALPVPHIVSQGVMRSRGRLLGRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSG 96

Query: 97  VKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQL 156
           VKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQL
Sbjct: 97  VKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQL 156

Query: 157 LTRTVYVDWAFSRGPIQKLTSTRPLHRRSRTPPRRLAALTC 197
           LTRTVYVDWAFSRGPIQKLTSTRPLHRRSRTPPRRLAALTC
Sbjct: 157 LTRTVYVDWAFSRGPIQKLTSTRPLHRRSRTPPRRLAALTC 197



>Os05g0140500 Similar to RNA binding motif protein 8B-related
          Length = 158

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 3/69 (4%)

Query: 70  FDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGY 129
           FDSL   G PG  P RSIEGWI+LV+GV E+A+EDDL+N F DFG VK+LHLNL+RRTG+
Sbjct: 83  FDSLGSDGGPG--PVRSIEGWIVLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGF 140

Query: 130 AKGYALVEY 138
            K   L +Y
Sbjct: 141 VK-VCLFQY 148



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,601,487
Number of extensions: 207716
Number of successful extensions: 748
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)