BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0130600 Os05g0130600|AK063251
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0130600  Conserved hypothetical protein                      134   2e-32
Os05g0130300  Conserved hypothetical protein                       94   1e-20

>Os05g0130600 Conserved hypothetical protein
          Length = 78

 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 65/78 (83%)

Query: 1  MDVMEKSRRAHFLFDDDDQTPPKQNGPQNDDQHNNDDGSGCLCVSCYGGVXXXXXXXXXX 60
          MDVMEKSRRAHFLFDDDDQTPPKQNGPQNDDQHNNDDGSGCLCVSCYGGV          
Sbjct: 1  MDVMEKSRRAHFLFDDDDQTPPKQNGPQNDDQHNNDDGSGCLCVSCYGGVAKPKAPKSSS 60

Query: 61 XXXDVVAGGRPAAGSNCT 78
             DVVAGGRPAAGSNCT
Sbjct: 61 PAKDVVAGGRPAAGSNCT 78



>Os05g0130300 Conserved hypothetical protein
          Length = 78

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 56/79 (70%), Gaps = 2/79 (2%)

Query: 1  MDVMEKSRRAHFLFDDDDQTPPKQNGPQNDDQHNNDDGS-GCLCVSCYGGVXXXXXXXXX 59
          MDVMEKSRRA+FLFDDDDQTPP+QNG +N DQHN+DDG    + VSCYGGV         
Sbjct: 1  MDVMEKSRRANFLFDDDDQTPPRQNGRRNVDQHNSDDGDVDSVRVSCYGGV-AKPKAKSS 59

Query: 60 XXXXDVVAGGRPAAGSNCT 78
              DVV  GRPAAGSN T
Sbjct: 60 STAKDVVVTGRPAAGSNRT 78



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,359,218
Number of extensions: 128866
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)