Os05g0130600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0130600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.22 | 0.48 | 12.8 | -2.02 | 0.641 | -1.07 | -0.561 | -3.44 | -0.816 | 10.6 | 1.016 | 17484 | -- | -- |
| 117.9 | 0.506 | 12.7 | -1.3 | 0.57 | -0.707 | -0.849 | -- | -0.614 | 11 | 10 | 26560 | -- | -- |
| 105.38 | 0.478 | 12.8 | -2.01 | 0.641 | -1.08 | -- | -3.43 | -0.819 | 10.5 | 1.004 | 17527 | -- | -- |
| 114.54 | 0.498 | 12.7 | -1.11 | 0.56 | -0.794 | -- | -- | -0.66 | 10.5 | 1.614 | 33246 | -- | -- |
| 121.99 | 0.514 | 12.9 | -1.95 | -- | -1.22 | -- | -3.49 | -0.805 | -- | 0.8668 | 26970 | -- | -- |
| 130.29 | 0.535 | 12.7 | -1.49 | 0.597 | -- | -0.746 | -- | -0.873 | 10.5 | -- | -- | -- | -- |
| 132.51 | 0.539 | 12.7 | -1.53 | 0.604 | -- | -- | -- | -0.876 | 10.3 | -- | -- | -- | -- |
| 131.22 | 0.534 | 12.7 | -0.95 | -- | -0.819 | -- | -- | -0.661 | -- | 1.575 | 45856 | -- | -- |
| 112.05 | 0.493 | 12.6 | -- | 0.569 | -1.53 | -- | -- | -0.257 | 9.68 | 1.05 | 47322 | -- | -- |
| 154.68 | 0.581 | 12.8 | -1.53 | -- | -- | -- | -- | -0.878 | -- | -- | -- | -- | -- |
| 193.86 | 0.651 | 12.7 | -- | 0.612 | -- | -- | -- | -0.706 | 10.4 | -- | -- | -- | -- |
| 124.51 | 0.52 | 12.6 | -- | -- | -1.64 | -- | -- | -0.11 | -- | 1.02 | 47143 | -- | -- |
| 216.81 | 0.687 | 12.7 | -- | -- | -- | -- | -- | -0.707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.56 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 2 | 100.58 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 8 |
| 3 | 100.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 4 | 100.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 100.70 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 6 | 100.84 | wind | 1 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 7 | 100.88 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 8 | 100.91 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 10 | 100.93 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 11 | 100.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 24 | 100.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 28 | 100.99 | radiation | 1 | 43200 | < th | dose dependent | sin | 8 | NA |
| 33 | 100.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 42 | 101.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 49 | 101.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 64 | 101.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 65 | 101.08 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 88 | 101.16 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 90 | 101.17 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 107 | 101.20 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 118 | 101.22 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 119 | 101.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 130 | 101.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 19 |
| 143 | 101.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 22 |
| 147 | 101.28 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 151 | 101.29 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 158 | 101.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 163 | 101.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 182 | 101.35 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 196 | 101.37 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 205 | 101.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 22 |
| 230 | 101.39 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 281 | 101.43 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 12 | 8 |
| 286 | 101.43 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 299 | 101.44 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 307 | 101.45 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 308 | 101.45 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 356 | 101.49 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 366 | 101.50 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 8 | 12 |
| 371 | 101.50 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 375 | 101.51 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 377 | 101.51 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 392 | 101.51 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 406 | 101.52 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 417 | 101.53 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 418 | 101.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 426 | 101.54 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 21 | NA |
| 513 | 101.58 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 544 | 101.59 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 21 | NA |
| 561 | 101.59 | humidity | 50 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 617 | 101.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 647 | 101.63 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 6 | NA |
| 684 | 101.64 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 13 |
| 790 | 101.68 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 927 | 101.73 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 953 | 101.73 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 970 | 101.74 | atmosphere | 1010 | 43200 | < th | dose independent | no | NA | NA |