Os05g0130300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0130300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 480.73 | 1.03 | 9.08 | 0.65 | 4.19 | 5.11 | -2.82 | 1.2 | -0.728 | 10.2 | 25.8 | 1607 | 7.6 | -- |
| 481.99 | 1.02 | 9.07 | 0.874 | 4.19 | 4.98 | -2.87 | -- | -0.72 | 10.2 | 26 | 1622 | 7.19 | -- |
| 511.3 | 1.05 | 9.11 | 0.352 | 4.18 | 4.98 | -- | 1.92 | -0.772 | 10.1 | 25.8 | 1586 | 7.07 | -- |
| 513.77 | 1.06 | 9.07 | 0.734 | 4.1 | 4.56 | -- | -- | -0.712 | 10 | 25.97 | 1501 | 5.46 | -- |
| 676.9 | 1.21 | 9.44 | -0.00943 | -- | 6.03 | -- | -2.12 | -1.43 | -- | 35.71 | 690 | 1.28 | -- |
| 861.36 | 1.38 | 9.32 | -0.637 | 4.02 | -- | -2.51 | -- | -1.84 | 10.2 | -- | -- | -- | -- |
| 886.4 | 1.39 | 9.33 | -0.738 | 4.04 | -- | -- | -- | -1.85 | 10.2 | -- | -- | -- | -- |
| 602.27 | 1.14 | 9.22 | 1.07 | -- | 7.28 | -- | -- | -0.948 | -- | 44.45 | 1070 | 4.91 | -- |
| 527.02 | 1.07 | 9.06 | -- | 4.1 | 4.37 | -- | -- | -0.736 | 10.1 | 26.05 | 1512 | 5.55 | -- |
| 1874.42 | 2.02 | 9.44 | -0.794 | -- | -- | -- | -- | -1.86 | -- | -- | -- | -- | -- |
| 900.75 | 1.4 | 9.31 | -- | 4.04 | -- | -- | -- | -1.77 | 10.2 | -- | -- | -- | -- |
| 582.16 | 1.12 | 9.29 | -- | -- | 7.36 | -- | -- | -1.22 | -- | 51.55 | 1156 | 5.97 | -- |
| 1891.06 | 2.03 | 9.42 | -- | -- | -- | -- | -- | -1.77 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 485.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 3 | 485.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 487.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 8 | 487.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 11 | 487.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 28 | 488.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 71 | 489.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 174 | 492.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 291 | 495.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 352 | 497.04 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 356 | 497.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 363 | 497.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 505 | 500.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 531 | 500.92 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 558 | 501.72 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 649 | 503.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 672 | 503.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 740 | 505.39 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 828 | 507.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |