BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0121400 Os05g0121400|AK101631
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0121400 Zinc finger, C2H2-type domain containing protein 617 e-177
Os02g0116000 Zinc finger, C2H2-type domain containing protein 363 e-101
Os02g0551900 Zinc finger, C2H2-type domain containing protein 65 9e-11
>Os05g0121400 Zinc finger, C2H2-type domain containing protein
Length = 314
Score = 617 bits (1591), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/314 (96%), Positives = 302/314 (96%)
Query: 1 SIGSQRTPKCVKALNGLVSGWGDSPEKLHQECLVHTLFQRPFSCHVDGCPFSYSRKDHLN 60
SIGSQRTPKCVKALNGLVSGWGDSPEKLHQECLVHTLFQRPFSCHVDGCPFSYSRKDHLN
Sbjct: 1 SIGSQRTPKCVKALNGLVSGWGDSPEKLHQECLVHTLFQRPFSCHVDGCPFSYSRKDHLN 60
Query: 61 RHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPCESKKEFICPEENCGKTFK 120
RHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPCESKKEFICPEENCGKTFK
Sbjct: 61 RHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSPCESKKEFICPEENCGKTFK 120
Query: 121 YASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDVCGTKQLKK 180
YASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDVCGTKQLKK
Sbjct: 121 YASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRHVVCDVCGTKQLKK 180
Query: 181 NFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKSF 240
NFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKSF
Sbjct: 181 NFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKRPFVCGFSGCGKSF 240
Query: 241 SYKHVRDNHEKSSAHVYVQANFEEIDGERPRQAGGRKRKAIPVESLMRKRVXXXXXXXXX 300
SYKHVRDNHEKSSAHVYVQANFEEIDGERPRQAGGRKRKAIPVESLMRKRV
Sbjct: 241 SYKHVRDNHEKSSAHVYVQANFEEIDGERPRQAGGRKRKAIPVESLMRKRVAAPDDDAPA 300
Query: 301 XXXGTEYLRWLLSG 314
GTEYLRWLLSG
Sbjct: 301 CDDGTEYLRWLLSG 314
>Os02g0116000 Zinc finger, C2H2-type domain containing protein
Length = 284
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/278 (63%), Positives = 212/278 (76%), Gaps = 6/278 (2%)
Query: 40 RPFSCHVDGCPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDG 99
R F C ++ CPFSY RKDHLNRH+L HQGKLF C M+GC RKF+IK N+QRHV+E+H+D
Sbjct: 1 RSFICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGCGRKFSIKANMQRHVKEIHEDE 60
Query: 100 SPCESKKEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKA 159
+ +S ++F+C EE C K FKYASK++KHEESHVKLDY EV+CCEPGCMK FTN+ECL+A
Sbjct: 61 TATKSNRQFVCKEEGCNKVFKYASKMKKHEESHVKLDYVEVVCCEPGCMKTFTNVECLRA 120
Query: 160 HNKSCHRHVVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHV 219
HN++CH++V CD+CG K LKKN KRH R HE TER++C + C+ SFS KSNL KH+
Sbjct: 121 HNQACHQYVQCDICGEKHLKKNIKRHLRAHEEVPSTERIKCSFEGCECSFSNKSNLTKHI 180
Query: 220 KAVHEQKRPFVCGFSGCGKSFSYKHVRDNHEKSSAHVYVQANFEEIDGER---PRQAGGR 276
KA H+Q +PF C F+GC K F YKHVRDNHEKSSAHVY QANF E+D + PR GGR
Sbjct: 181 KASHDQVKPFACRFTGCEKVFPYKHVRDNHEKSSAHVYTQANFTEMDEQLLSCPR--GGR 238
Query: 277 KRKAIPVESLMRKRVXXXXXXXXXXXXGTEYLRWLLSG 314
KRKA+ VE+L RKRV GTEYLRWLLSG
Sbjct: 239 KRKAVTVETLTRKRV-TMHGDASSLDNGTEYLRWLLSG 275
>Os02g0551900 Zinc finger, C2H2-type domain containing protein
Length = 343
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 34/212 (16%)
Query: 42 FSCHVDGCPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSP 101
F C +GC ++ L +H H + + C GC++KF ++RH +H
Sbjct: 64 FLCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKKFLDSSKLKRHFL-IH----- 117
Query: 102 CESKKEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHN 161
+K F+CP E CGK F L+ H ++H +Y +C P C + FT L+AH
Sbjct: 118 -TGEKNFVCPHEGCGKAFSLDFNLKAHMKTHSVDNYH--VCKYPECARRFTQESKLRAH- 173
Query: 162 KSCHRHVVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKA 221
+K+ ++ + G T R L D S S+ K A
Sbjct: 174 ----------------IKQQHEKGGLQNPGGSATN--RSGLAD----HSHNSHTPKPSAA 211
Query: 222 --VHEQKRPFVCGFSGCGKSFSYKHVRDNHEK 251
RP+VC + GC K++ +++ + H K
Sbjct: 212 PPTPSADRPYVCPYDGCAKAYIHEYKLNLHLK 243
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,277,552
Number of extensions: 479760
Number of successful extensions: 1277
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 5
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)