Os05g0121400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os05g0121400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.69 | 0.296 | 10.1 | -1.15 | 0.264 | -1.03 | -0.254 | -0.629 | -0.0485 | 13.7 | 18.9 | 6566 | -- | -- |
| 39.98 | 0.294 | 10.1 | -1.2 | 0.266 | -0.843 | -0.255 | -- | -0.056 | 13.7 | 19.1 | 6549 | -- | -- |
| 39.87 | 0.294 | 10.1 | -1.16 | 0.262 | -1.03 | -- | -0.646 | -0.0491 | 13.2 | 18.95 | 6551 | -- | -- |
| 40.16 | 0.295 | 10.1 | -1.18 | 0.258 | -0.824 | -- | -- | -0.0539 | 13.2 | 18.93 | 6510 | -- | -- |
| 44.01 | 0.309 | 10.1 | -1.16 | -- | -0.983 | -- | -0.536 | -0.0493 | -- | 18.9 | 6289 | -- | -- |
| 49.04 | 0.328 | 10.1 | -0.643 | 0.246 | -- | -0.282 | -- | 0.147 | 14 | -- | -- | -- | -- |
| 49.25 | 0.329 | 10.1 | -0.652 | 0.246 | -- | -- | -- | 0.144 | 13.3 | -- | -- | -- | -- |
| 44.23 | 0.31 | 10.1 | -1.17 | -- | -0.802 | -- | -- | -0.055 | -- | 18.94 | 6268 | -- | -- |
| 57.47 | 0.353 | 10.1 | -- | 0.298 | -0.28 | -- | -- | 0.151 | 12.8 | 22.4 | 985 | -- | -- |
| 52.98 | 0.34 | 10.1 | -0.661 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 60.44 | 0.364 | 10 | -- | 0.257 | -- | -- | -- | 0.217 | 13.4 | -- | -- | -- | -- |
| 61.63 | 0.366 | 10.1 | -- | -- | -0.213 | -- | -- | 0.148 | -- | 22.3 | 310 | -- | -- |
| 64.51 | 0.375 | 10 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 9 | 36.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 23 | 36.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 25 | 37.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 5 |
| 36 | 37.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 47 | 37.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 62 | 37.62 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 63 | 37.63 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 74 | 37.71 | temperature | 15 | 90 | > th | dose dependent | sin | 5 | NA |
| 82 | 37.76 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 99 | 37.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 109 | 37.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 246 | 38.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 626 | 39.85 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 642 | 39.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 651 | 39.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 664 | 39.92 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 673 | 39.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 690 | 39.98 | humidity | 60 | 43200 | < th | dose dependent | sin | 6 | NA |
| 730 | 40.04 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 791 | 40.14 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 823 | 40.19 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 838 | 40.21 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 869 | 40.26 | humidity | 70 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 880 | 40.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 942 | 40.39 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 954 | 40.41 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 966 | 40.43 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 967 | 40.43 | humidity | 60 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 969 | 40.43 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 975 | 40.44 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |