BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0121400 Os05g0121400|AK101631
(314 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72050.2 | chr1:27115082-27117228 FORWARD LENGTH=413 273 7e-74
AT4G06634.1 | chr4:3764499-3766439 REVERSE LENGTH=388 57 2e-08
AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361 49 2e-06
>AT1G72050.2 | chr1:27115082-27117228 FORWARD LENGTH=413
Length = 412
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/325 (45%), Positives = 188/325 (57%), Gaps = 61/325 (18%)
Query: 25 PEKLHQECLVHTLFQRPFSCHVDGCPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTI 84
P L Q H+L +R F+C+VD C SY RKDHLNRHLLTH+GKLF CP E C +F++
Sbjct: 78 PAHLKQHMQSHSL-ERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSV 136
Query: 85 KGNIQRHVQEMHK----------------------------------------------- 97
+GN+ RHV++ H
Sbjct: 137 QGNVGRHVKKYHSNDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGKD 196
Query: 98 -----DGSPCE---SKKEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMK 149
D P E +K+ +C E CGK FKY S+LQKH++SHVKLD E C EPGCMK
Sbjct: 197 NNGNGDSQPAECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMK 256
Query: 150 AFTNLECLKAHNKSCHRHVVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSF 209
FTN ECLK+H +SCH+H+ C++CG+K LKKN KRH R H+ ++C ++ C +F
Sbjct: 257 YFTNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTF 316
Query: 210 SKKSNLDKHVKAVHEQKRPFVCGFSGCGKSFSYKHVRDNHEKSSAHVYVQANFEEIDGE- 268
SK SNL KH+KAVH+ RPFVCGF GCG F+YKHVR+ HE S HVY +F E D +
Sbjct: 317 SKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDF 376
Query: 269 --RPRQAGGRKRKAIPVESLMRKRV 291
RPR GG KRK + E L+RKRV
Sbjct: 377 TSRPR--GGLKRKQVTAEMLVRKRV 399
>AT4G06634.1 | chr4:3764499-3766439 REVERSE LENGTH=388
Length = 387
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 42 FSCHVDGCPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSP 101
F C DGC ++ L +H H + + C EGC +KF ++RH +H
Sbjct: 79 FLCSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHYL-IH----- 132
Query: 102 CESKKEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHN 161
++ +IC E CGK F L+ H ++H + +Y IC GC+K + + LK H
Sbjct: 133 -TGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYH--ICPYSGCVKRYAHEYKLKNHV 189
Query: 162 KSCH 165
+ H
Sbjct: 190 AAYH 193
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 32/142 (22%)
Query: 108 FICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHNKSCHRH 167
F+C + CGKTF S L+KH H + Y +C + GC K F + LK
Sbjct: 79 FLCSYDGCGKTFFDVSALRKHSHIHGERQY---VCDQEGCGKKFLDSSKLK--------- 126
Query: 168 VVCDVCGTKQLKKNFKRHQRMHEGSCVTERVRCHLKDCKLSFSKKSNLDKHVKAVHEQKR 227
RH +H G C + C +FS NL H+K H Q+
Sbjct: 127 ----------------RHYLIHTGE---RNYICTYEGCGKAFSLDFNLRSHMK-THSQEN 166
Query: 228 PFVCGFSGCGKSFSYKHVRDNH 249
+C +SGC K +++++ NH
Sbjct: 167 YHICPYSGCVKRYAHEYKLKNH 188
>AT3G48430.1 | chr3:17935609-17940456 FORWARD LENGTH=1361
Length = 1360
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 42 FSCHVDGCPFSYSRKDHLNRHLLTHQGKLFACPMEGCNRKFTIKGNIQRHVQEMHKDGSP 101
+ C+++GC S+S + + L+ H+ + CP++GC + F + +H Q +H D P
Sbjct: 1243 YQCNMEGCTMSFSSE----KQLMLHKRNI--CPIKGCGKNFFSHKYLVQH-QRVHSDDRP 1295
Query: 102 CESKKEFICPEENCGKTFKYASKLQKHEESHVKLDYSEVICCEPGCMKAFTNLECLKAHN 161
+ CP + C TFK+A +H H +C EP C + F + H
Sbjct: 1296 LK------CPWKGCKMTFKWAWSRTEHIRVHTGA--RPYVCAEPDCGQTFRFVSDFSRHK 1347
Query: 162 K 162
+
Sbjct: 1348 R 1348
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,401,804
Number of extensions: 330152
Number of successful extensions: 884
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 216
Effective length of database: 8,419,801
Effective search space: 1818677016
Effective search space used: 1818677016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)