BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0111200 Os05g0111200|AK101693
         (146 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0111200  Similar to Amino acid selective channel protein     271   1e-73
Os03g0305600  Mitochondrial import inner membrane translocas...    73   7e-14

>Os05g0111200 Similar to Amino acid selective channel protein
          Length = 146

 Score =  271 bits (693), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/146 (90%), Positives = 132/146 (90%)

Query: 1   MPRGGFSGSISSPRIDVAIDMGNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSK 60
           MPRGGFSGSISSPRIDVAIDMGNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSK
Sbjct: 1   MPRGGFSGSISSPRIDVAIDMGNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSK 60

Query: 61  HKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMXXXXXXXXXXXXXXNN 120
           HKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAM              NN
Sbjct: 61  HKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMIGGALSGALISAASNN 120

Query: 121 HKDKIIKDAITGGAVATAVEFINYLT 146
           HKDKIIKDAITGGAVATAVEFINYLT
Sbjct: 121 HKDKIIKDAITGGAVATAVEFINYLT 146



>Os03g0305600 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 179

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 27/151 (17%)

Query: 19  IDMGNPFLNRTVDGFLKIGAVGACKVAAEDT-------------------------FDCL 53
           +D+G+P LNR  + F+K   +GA +  A ++                         F  L
Sbjct: 27  VDLGHPLLNRVAESFVKAAGIGAVQAVARESYFMAMEGEGGGTGAVSDSTGARKRSFPDL 86

Query: 54  HRGDVSKHKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMXXXXXXXXX 113
           + G+ SK   E M+K + KE   WG  AG++ G+ YG+   RG HDWKN++         
Sbjct: 87  NGGNSSKSA-EAMVKSVSKESLQWGLAAGLHSGLTYGLTEARGTHDWKNSVVAGALTGAA 145

Query: 114 XXXXXNNHK-DKIIKDAITGGAVATAVEFIN 143
                +    +++++ AI G A++TA   ++
Sbjct: 146 VALTSDRASHERVVQCAIAGAALSTAANVLS 176



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,698,205
Number of extensions: 165781
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 55
Effective length of database: 12,284,327
Effective search space: 675637985
Effective search space used: 675637985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)