FiT-DB / Search/ Help/ Sample detail

Os03g0305600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mitochondrial import inner membrane translocase, subunit Tim17/22 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.031) R2 : 0.518
β1 : -1.13 (0.114) R2dD : 0.109 R2D : 0.0938
β2 : 0.686 (0.0772) R2dC : 0.0855 R2C : 0.0241
β3 : -1.53 (0.12) R2dE : 0.176 R2E : 0.109
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.702 (0.0662) R2dN8 : 0.16 R2N8 : 0.189
σ : 0.579
deviance : 154.3
__
_____
C
peak time of C : 9.01
E
wheather : humidity
threshold : 49.61
memory length : 1281
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.49 0.578 10.5 -1.32 0.643 -1.49 0.719 1.6 0.67 6.98 47.46 1488 -- --
154.43 0.579 10.5 -1.15 0.667 -1.52 0.0455 -- 0.689 8.92 44.94 1307 -- --
152.06 0.574 10.5 -1.28 0.623 -1.51 -- 1.43 0.683 7.89 42.79 1405 -- --
154.3 0.579 10.5 -1.13 0.686 -1.53 -- -- 0.702 9.01 49.61 1281 -- --
172.49 0.612 10.5 -1.3 -- -1.56 -- 1.47 0.678 -- 43.65 1405 -- --
205.37 0.672 10.5 -1.06 0.648 -- 0.687 -- 0.762 7.08 -- -- -- --
206.2 0.672 10.5 -1.04 0.65 -- -- -- 0.762 7.56 -- -- -- --
175.92 0.618 10.5 -1.11 -- -1.46 -- -- 0.702 -- 53.04 1398 -- --
185.52 0.634 10.5 -- 0.696 -1.72 -- -- 0.705 9.16 65.87 1268 -- --
228.83 0.707 10.5 -1.04 -- -- -- -- 0.772 -- -- -- -- --
234.96 0.717 10.4 -- 0.641 -- -- -- 0.879 7.67 -- -- -- --
205.49 0.668 10.5 -- -- -1.91 -- -- 0.672 -- 72.44 1412 -- --
257.09 0.748 10.4 -- -- -- -- -- 0.887 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 144.16 humidity 90 720 > th dose dependent rect. 20 3
2 144.37 humidity 80 1440 > th dose independent rect. 7 12
9 145.11 humidity 90 720 > th dose dependent rect. 8 16
10 145.14 humidity 80 1440 < th dose independent rect. 7 12
11 145.19 humidity 90 720 > th dose independent rect. 20 3
35 146.20 humidity 80 1440 > th dose independent sin 0 NA
57 146.93 humidity 80 1440 < th dose independent sin 0 NA
79 147.47 humidity 90 720 > th dose dependent rect. 15 9
83 147.55 humidity 70 1440 > th dose dependent sin 23 NA
87 147.62 humidity 70 1440 > th dose dependent rect. 8 11
105 147.96 humidity 70 1440 > th dose dependent rect. 5 14
228 149.75 humidity 90 720 > th dose dependent sin 20 NA
242 149.82 humidity 70 1440 > th dose dependent rect. 10 4
245 149.82 humidity 50 1440 > th dose dependent rect. 4 19
288 150.14 humidity 90 1440 < th dose dependent rect. 9 10
298 150.17 humidity 90 1440 < th dose dependent rect. 11 2
303 150.19 humidity 60 1440 > th dose dependent rect. 11 2
311 150.22 humidity 90 1440 < th dose dependent rect. 4 15
340 150.36 humidity 90 1440 < th dose dependent sin 0 NA
512 151.15 humidity 50 1440 > th dose dependent rect. 9 22
586 151.45 humidity 50 1440 > th dose dependent rect. 10 5
614 151.56 humidity 50 1440 > th dose dependent no NA NA
617 151.59 humidity 90 1440 < th dose dependent rect. 10 5
623 151.61 humidity 60 720 > th dose dependent rect. 17 6
700 151.93 humidity 90 720 > th dose independent rect. 7 17
704 151.93 humidity 50 1440 > th dose dependent rect. 15 23
731 152.09 humidity 90 720 > th dose independent rect. 9 16
812 152.36 humidity 90 1440 < th dose dependent rect. 9 22
884 152.68 humidity 90 1440 < th dose dependent no NA NA
941 152.96 humidity 90 1440 < th dose dependent rect. 15 23