BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0305600 Os03g0305600|AK063714
         (179 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0305600  Mitochondrial import inner membrane translocas...   301   2e-82
Os05g0111200  Similar to Amino acid selective channel protein      72   2e-13

>Os03g0305600 Mitochondrial import inner membrane translocase, subunit Tim17/22
           family protein
          Length = 179

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 153/179 (85%)

Query: 1   MSGSSNSSLETRTFLDEVRGLEKNWMVDLGHPLLNRVAESFVKAAGIGAVQAVARESYFX 60
           MSGSSNSSLETRTFLDEVRGLEKNWMVDLGHPLLNRVAESFVKAAGIGAVQAVARESYF 
Sbjct: 1   MSGSSNSSLETRTFLDEVRGLEKNWMVDLGHPLLNRVAESFVKAAGIGAVQAVARESYFM 60

Query: 61  XXXXXXXXXXXVSDSTGARKRSFPDLNGGNSSKSAEAMVKSVSKESLQWGLAAGLHSGLT 120
                      VSDSTGARKRSFPDLNGGNSSKSAEAMVKSVSKESLQWGLAAGLHSGLT
Sbjct: 61  AMEGEGGGTGAVSDSTGARKRSFPDLNGGNSSKSAEAMVKSVSKESLQWGLAAGLHSGLT 120

Query: 121 YGLTEARGTHDWKNSXXXXXXXXXXXXXXSDRASHERVVQCAIAGAALSTAANVLSGIL 179
           YGLTEARGTHDWKNS              SDRASHERVVQCAIAGAALSTAANVLSGIL
Sbjct: 121 YGLTEARGTHDWKNSVVAGALTGAAVALTSDRASHERVVQCAIAGAALSTAANVLSGIL 179



>Os05g0111200 Similar to Amino acid selective channel protein
          Length = 146

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 27/151 (17%)

Query: 27  VDLGHPLLNRVAESFVKAAGIGAVQAVARESYFXXXXXXXXXXXXVSDSTGARKRSFPDL 86
           +D+G+P LNR  + F+K   +GA +  A ++                         F  L
Sbjct: 19  IDMGNPFLNRTVDGFLKIGAVGACKVAAEDT-------------------------FDCL 53

Query: 87  NGGNSSK-SAEAMVKSVSKESLQWGLAAGLHSGLTYGLTEARGTHDWKNSXXXXXXXXXX 145
           + G+ SK   E M+K + KE   WG  AG++ G+ YG+   RG HDWKN+          
Sbjct: 54  HRGDVSKHKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMIGGALSGAL 113

Query: 146 XXXXSDRASHERVVQCAIAGAALSTAANVLS 176
               S+    +++++ AI G A++TA   ++
Sbjct: 114 ISAASNN-HKDKIIKDAITGGAVATAVEFIN 143



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.125    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,493,075
Number of extensions: 124944
Number of successful extensions: 230
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 85
Effective length of database: 12,127,685
Effective search space: 1030853225
Effective search space used: 1030853225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)