Os05g0111200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid selective channel protein.
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Os05g0111200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid selective channel protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.02 | 0.789 | 8.62 | -3.12 | 2.54 | 5.04 | -2.61 | -0.0802 | -2.06 | 20.7 | 9.583 | 26 | 20.2 | -- |
| 282.01 | 0.782 | 8.63 | -3.11 | 2.67 | 5.13 | -2.55 | -- | -2.06 | 20.7 | 9.036 | 25 | 20.3 | -- |
| 288.02 | 0.79 | 8.62 | -2.92 | 2.86 | 5.14 | -- | 2.84 | -2.07 | 20.6 | 8.109 | 19 | 20.3 | -- |
| 303.22 | 0.811 | 8.63 | -3.05 | 2.7 | 5.21 | -- | -- | -2.08 | 20.7 | 9.948 | 25 | 20.3 | -- |
| 321.66 | 0.835 | 8.48 | -2.55 | -- | 3.16 | -- | 4.35 | -1.89 | -- | 17.29 | 80 | 19.2 | -- |
| 384.37 | 0.919 | 8.46 | -2.63 | 1.98 | -- | 2.32 | -- | -1.76 | 12.8 | -- | -- | -- | -- |
| 406.11 | 0.944 | 8.46 | -2.54 | 1.99 | -- | -- | -- | -1.74 | 13.1 | -- | -- | -- | -- |
| 319.09 | 0.832 | 8.54 | -3.01 | -- | 3.23 | -- | -- | -2 | -- | 17.12 | 75 | 18.7 | -- |
| 532.88 | 1.08 | 8.5 | -- | 1.71 | 3.31 | -- | -- | -1.64 | 18.7 | 9.948 | 25 | 20.3 | -- |
| 650.7 | 1.19 | 8.49 | -2.62 | -- | -- | -- | -- | -1.78 | -- | -- | -- | -- | -- |
| 576.55 | 1.12 | 8.39 | -- | 2.03 | -- | -- | -- | -1.46 | 13.1 | -- | -- | -- | -- |
| 544.77 | 1.09 | 8.44 | -- | -- | 2.81 | -- | -- | -1.58 | -- | 11.35 | 26 | 17.7 | -- |
| 831.57 | 1.35 | 8.42 | -- | -- | -- | -- | -- | -1.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 282.39 | temperature | 10 | 30 | > th | dose dependent | sin | 2 | NA |
| 12 | 285.88 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 38 | 295.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 41 | 297.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 67 | 302.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 86 | 304.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 91 | 304.23 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 107 | 304.75 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 142 | 306.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 152 | 306.61 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 157 | 306.82 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 160 | 306.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 161 | 306.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 192 | 307.27 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 254 | 307.89 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 389 | 309.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 435 | 309.23 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 505 | 309.36 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 519 | 309.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 701 | 310.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 707 | 310.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 727 | 310.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 746 | 311.14 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 773 | 311.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 792 | 311.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 794 | 311.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 816 | 311.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 818 | 311.88 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 820 | 311.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 822 | 311.90 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 848 | 312.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 855 | 312.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 938 | 312.66 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 18 |