BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0111200 Os05g0111200|AK101693
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28900.1  | chr2:12414423-12415459 REVERSE LENGTH=149          179   6e-46
AT4G16160.2  | chr4:9157545-9158738 FORWARD LENGTH=179             69   6e-13

>AT2G28900.1 | chr2:12414423-12415459 REVERSE LENGTH=149
          Length = 148

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 98/143 (68%)

Query: 1   MPRGGFSGSISSPRIDVAIDMGNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSK 60
           MP   FSG++S+P++ VA+DMGNPFLN TVD FLKIGAVG  K  AEDT+  + +G +SK
Sbjct: 1   MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query: 61  HKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMXXXXXXXXXXXXXXNN 120
             LEH LKK+CKEG YWG   GVY+G EYG+ERIRG  DWKNAM                
Sbjct: 61  STLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKK 120

Query: 121 HKDKIIKDAITGGAVATAVEFIN 143
            KD I+ DAI GGA+ATA +F+N
Sbjct: 121 GKDTIVIDAILGGALATASQFVN 143



>AT4G16160.2 | chr4:9157545-9158738 FORWARD LENGTH=179
          Length = 178

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 31/155 (20%)

Query: 19  IDMGNPFLNRTVDGFLKIGAVGACKVAAEDT---------FDCLH--------------- 54
            D+G+P LNR  D F+K   VGA +  + +          FD  +               
Sbjct: 22  FDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNVGPPSEITGNKKHRF 81

Query: 55  ---RGDVSKHKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIR-GRHDWKNAMXXXXXX 110
              RG+ SK  L+ ++K   KE   WG  AG+Y G+ YG+  +R G HDW+N+       
Sbjct: 82  PNLRGESSK-SLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALT 140

Query: 111 XXXXXXXXNNHK--DKIIKDAITGGAVATAVEFIN 143
                   +     +++++ A+TG A++TA   ++
Sbjct: 141 GAAMAMTTSERTSHEQVVQSALTGAAISTAANLLS 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,961,587
Number of extensions: 105652
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)