BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0107900 Os05g0107900|AY335486
         (208 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0107900  Drought induced 19 family protein                   365   e-102
Os01g0971100  Drought induced 19 family protein                   140   9e-34

>Os05g0107900 Drought induced 19 family protein
          Length = 208

 Score =  365 bits (938), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/208 (86%), Positives = 179/208 (86%)

Query: 1   MASYHQQQGGSTFMAIPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHC 60
           MASYHQQQGGSTFMAIPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHC
Sbjct: 1   MASYHQQQGGSTFMAIPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHC 60

Query: 61  FDMKNAVCPICADNLDKDTDEHFRVQXXXXXXXXXXXXXXXXXXXAAADKGSYEEDSYFE 120
           FDMKNAVCPICADNLDKDTDEHFRVQ                   AAADKGSYEEDSYFE
Sbjct: 61  FDMKNAVCPICADNLDKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFE 120

Query: 121 APSHCMGRPAXXXXXXXXXXQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVM 180
           APSHCMGRPA          QFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVM
Sbjct: 121 APSHCMGRPAPDSSPDPLLSQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVM 180

Query: 181 DDASKEELEERLQRIEFVKQMLMTTIAY 208
           DDASKEELEERLQRIEFVKQMLMTTIAY
Sbjct: 181 DDASKEELEERLQRIEFVKQMLMTTIAY 208



>Os01g0971100 Drought induced 19 family protein
          Length = 202

 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 100/180 (55%), Gaps = 11/180 (6%)

Query: 30  DDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDTDEHFRVQXXX 89
           + E WEY PCPFCYIEVEV F+C+HLQEEHCFD +NAVCP+CADN+ +D   HFRVQ   
Sbjct: 30  EGELWEYFPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQ--- 86

Query: 90  XXXXXXXXXXXXXXXXAAADKGSYEEDSYFEAPSHCM--GRPAXXXXXXXXXXQFICCSL 147
                           ++    S   D YFE P   M   R            QFIC   
Sbjct: 87  --HSHLLKRRKPSRPSSSWPTPSNNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMA 144

Query: 148 APPVDSPRRSEADAEGHGSSSSDDQKRREQGVM-DDASKEELEERLQRIEFVKQMLMTTI 206
               +S      + E   S+ S DQ+  ++  + DDASK EL+ERLQRIEFVK+++M+TI
Sbjct: 145 QTDTNS---DNTNTEIAVSAVSHDQRLSQRVTLTDDASKLELKERLQRIEFVKEIIMSTI 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,880,374
Number of extensions: 268855
Number of successful extensions: 1161
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 2
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)