Os05g0107900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Drought induced 19 family protein.
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Os05g0107900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Drought induced 19 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.46 | 0.61 | 8.14 | -3.57 | 2.74 | 1.96 | 0.208 | -4.17 | -1.31 | 6.02 | 78 | 1416 | -- | -- |
| 181.52 | 0.628 | 8.1 | -3.26 | 2.67 | 1.67 | 0.00934 | -- | -1.23 | 6.26 | 77 | 1314 | -- | -- |
| 168.56 | 0.605 | 8.14 | -3.56 | 2.74 | 1.97 | -- | -4.15 | -1.31 | 6.02 | 77.97 | 1416 | -- | -- |
| 180.6 | 0.626 | 8.12 | -3.22 | 2.7 | 1.73 | -- | -- | -1.27 | 6.42 | 76.57 | 1238 | -- | -- |
| 535.24 | 1.08 | 8.19 | -3.52 | -- | 2.52 | -- | -3.79 | -1.29 | -- | 77.87 | 1318 | -- | -- |
| 222.22 | 0.699 | 8.09 | -3.08 | 2.78 | -- | 0.28 | -- | -1.15 | 6.06 | -- | -- | -- | -- |
| 222.42 | 0.698 | 8.09 | -3.08 | 2.78 | -- | -- | -- | -1.15 | 6.06 | -- | -- | -- | -- |
| 548.52 | 1.09 | 8.16 | -3.17 | -- | 2.3 | -- | -- | -1.21 | -- | 77.47 | 1321 | -- | -- |
| 427.57 | 0.963 | 8.13 | -- | 2.75 | 1.59 | -- | -- | -1.39 | 6.35 | 88 | 6695 | -- | -- |
| 622.17 | 1.17 | 8.14 | -3 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 472.74 | 1.02 | 8.01 | -- | 2.73 | -- | -- | -- | -0.805 | 6.12 | -- | -- | -- | -- |
| 762.62 | 1.29 | 8.13 | -- | -- | 2.29 | -- | -- | -1.04 | -- | 87.07 | 1339 | -- | -- |
| 859.88 | 1.37 | 8.06 | -- | -- | -- | -- | -- | -0.753 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 2 | 156.71 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 4 | 157.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 12 | 157.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 15 | 158.50 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 19 | 158.75 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 24 | 159.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 44 | 159.99 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 57 | 160.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 58 | 160.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 99 | 161.95 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 117 | 162.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 118 | 162.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 186 | 165.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 194 | 165.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 202 | 165.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 205 | 165.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 215 | 165.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 219 | 165.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 306 | 166.85 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 314 | 166.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 322 | 166.93 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 367 | 167.19 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 374 | 167.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 375 | 167.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 389 | 167.56 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 439 | 167.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 444 | 167.96 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 504 | 168.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 508 | 168.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 513 | 168.69 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 6 |
| 533 | 168.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 582 | 169.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 587 | 169.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 641 | 169.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 754 | 170.59 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 786 | 170.79 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |