BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0107900 Os05g0107900|AY335486
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 60 6e-10
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 60 9e-10
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 55 3e-08
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 20 NFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDT 79
NF + EI G+D++ E CPFC ++ LC H+ E+H D KN VCPICA + D
Sbjct: 27 NFLGFEEIEGEDDFREEYACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDM 86
Query: 80 DEHFRVQ 86
H +Q
Sbjct: 87 IAHITLQ 93
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 24 YSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDTDEHF 83
+ EI GDD++ E CPFC ++ LC H+ +EH + KNAVCP+C+ + D H
Sbjct: 22 FEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHK 81
Query: 84 R-VQXXXXXXXXXXXXXXXXXXXAAADKGSYEEDSYFEAPSHCMGRPAXXXXXXXXXXQF 142
R +G + F + + G A F
Sbjct: 82 RFTMGRKRKSRKSGTNSTLSLLRKELREGDLQRLLGFTSRN---GSVASSVTPDPLLSSF 138
Query: 143 ICCSLAPPVDSPRRSEADAEGHGSSSSDDQ-KRREQGVMDDASKEELEERLQRIEFVKQM 201
I + + +PR+++ +E D Q +R+ Q + S ++ EER + EFV+++
Sbjct: 139 ISPTRSQSSPAPRQTKNVSE-------DKQIERKRQVFISPVSLKDREERRHKSEFVQRL 191
Query: 202 LMTTI 206
L + I
Sbjct: 192 LSSAI 196
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 14 MAIPTIN--FQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPIC 71
+A P+ + F + EI G++E+ E CPFC ++ LC H+ E+H + KN VCP+C
Sbjct: 19 LAFPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSLCCHIDEDHPMEAKNGVCPVC 78
Query: 72 ADNLDKDTDEHFRVQ 86
A + D H +Q
Sbjct: 79 AVRVGVDMVAHITLQ 93
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,241,477
Number of extensions: 161957
Number of successful extensions: 702
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 5
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)