BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0107700 Os05g0107700|AK065182
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0107700  Transcription factor IIA small subunit (Transc...   219   3e-58
Os01g0970500  Similar to Transcription factor IIA small subu...   194   1e-50

>Os05g0107700 Transcription factor IIA small subunit (Transcription factor IIA
           gamma subunit)
          Length = 106

 Score =  219 bits (558), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106



>Os01g0970500 Similar to Transcription factor IIA small subunit (Transcription
           factor IIA gamma subunit)
          Length = 109

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 98/104 (94%)

Query: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60
           MATFELYRRSTIGMCLT+TLD+MVSSG LSPELAIQVLVQFDKSMT ALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLL 104
           GHLHTYRFCDNVWTFILT+A FKNEE TE + KVKIVACDSKLL
Sbjct: 61  GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLL 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,712,003
Number of extensions: 76901
Number of successful extensions: 159
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)