Os05g0107700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor IIA small subunit (Transcription factor IIA gamma subunit).
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Os05g0107700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor IIA small subunit (Transcription factor IIA gamma subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.26 | 0.15 | 12.2 | 0.0167 | 0.36 | 0.652 | -0.233 | 0.94 | -0.0061 | 6.77 | 30.97 | 10 | -- | -- |
| 11.34 | 0.157 | 12.2 | 0.169 | 0.361 | 0.775 | -0.218 | -- | 0.0269 | 6.85 | 37.68 | 9 | -- | -- |
| 10.39 | 0.15 | 12.2 | 0.0153 | 0.36 | 0.651 | -- | 0.926 | -0.0046 | 6.83 | 30.91 | 8 | -- | -- |
| 11.46 | 0.158 | 12.2 | 0.16 | 0.364 | 0.757 | -- | -- | 0.0241 | 6.75 | 50.42 | 7 | -- | -- |
| 14.03 | 0.174 | 12.2 | 0.0595 | -- | 0.877 | -- | 1.09 | 0.0428 | -- | 30.21 | 259 | -- | -- |
| 16.87 | 0.193 | 12.2 | 0.0135 | 0.49 | -- | 0.0829 | -- | -0.0817 | 5.15 | -- | -- | -- | -- |
| 16.88 | 0.192 | 12.2 | 0.0136 | 0.491 | -- | -- | -- | -0.082 | 5.17 | -- | -- | -- | -- |
| 15.15 | 0.181 | 12.2 | 0.228 | -- | 0.952 | -- | -- | 0.0774 | -- | 31.81 | 259 | -- | -- |
| 12.06 | 0.162 | 12.2 | -- | 0.376 | 0.673 | -- | -- | -0.00215 | 6.49 | 69.17 | 4 | -- | -- |
| 29.51 | 0.254 | 12.2 | 0.0309 | -- | -- | -- | -- | -0.0697 | -- | -- | -- | -- | -- |
| 16.89 | 0.192 | 12.2 | -- | 0.491 | -- | -- | -- | -0.0836 | 5.17 | -- | -- | -- | -- |
| 16.62 | 0.19 | 12.2 | -- | -- | 0.898 | -- | -- | 0.0273 | -- | 46.44 | 253 | -- | -- |
| 29.53 | 0.254 | 12.2 | -- | -- | -- | -- | -- | -0.0731 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 2 | 10.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 4 | 10.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 10.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 6 | 10.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 8 | 10.30 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 10.30 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 11 | 10.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 15 | 10.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 17 | 10.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 18 | 10.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 10.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 24 | 10.38 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 37 | 10.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 42 | 10.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 44 | 10.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 46 | 10.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 55 | 10.52 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 58 | 10.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 60 | 10.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 70 | 10.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 82 | 10.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 96 | 10.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 112 | 10.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 128 | 10.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 129 | 10.82 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 21 |
| 143 | 10.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 156 | 10.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 164 | 10.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 196 | 10.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 206 | 10.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 261 | 11.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 355 | 11.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 437 | 11.17 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 509 | 11.22 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 23 |
| 511 | 11.22 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 520 | 11.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 569 | 11.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 709 | 11.35 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 785 | 11.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 787 | 11.41 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 822 | 11.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 832 | 11.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 860 | 11.46 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 23 |
| 883 | 11.48 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 995 | 11.56 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |