Os01g0970500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor IIA small subunit (Transcription factor IIA gamma subunit).
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Os01g0970500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor IIA small subunit (Transcription factor IIA gamma subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.98 | 0.29 | 9.55 | 0.201 | 0.481 | -2.22 | -0.53 | 0.0373 | -0.073 | 21.7 | 10.25 | 6715 | -- | -- |
| 36.42 | 0.281 | 9.53 | 0.274 | 0.479 | -2.27 | -0.545 | -- | 0.0247 | 21.6 | 9.757 | 8106 | -- | -- |
| 37.46 | 0.285 | 9.53 | 0.272 | 0.476 | -2.29 | -- | -0.175 | 0.027 | 21.8 | 10.75 | 8133 | -- | -- |
| 37.47 | 0.285 | 9.53 | 0.299 | 0.475 | -2.28 | -- | -- | 0.031 | 21.8 | 10.09 | 8137 | -- | -- |
| 47.87 | 0.322 | 9.52 | 0.285 | -- | -2.27 | -- | -0.196 | 0.0405 | -- | 9.82 | 8734 | -- | -- |
| 119.8 | 0.513 | 9.68 | -0.905 | 0.401 | -- | -0.645 | -- | -0.619 | 21 | -- | -- | -- | -- |
| 121.23 | 0.516 | 9.68 | -0.883 | 0.403 | -- | -- | -- | -0.619 | 21 | -- | -- | -- | -- |
| 47.91 | 0.322 | 9.51 | 0.326 | -- | -2.26 | -- | -- | 0.0512 | -- | 7.925 | 8733 | -- | -- |
| 39.06 | 0.291 | 9.55 | -- | 0.473 | -2.11 | -- | -- | -0.0451 | 21.7 | 10.29 | 8062 | -- | -- |
| 130.53 | 0.534 | 9.66 | -0.883 | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
| 141.78 | 0.557 | 9.65 | -- | 0.404 | -- | -- | -- | -0.521 | 20.8 | -- | -- | -- | -- |
| 49.7 | 0.328 | 9.54 | -- | -- | -2.07 | -- | -- | -0.0867 | -- | 6.488 | 7302 | -- | -- |
| 151.08 | 0.574 | 9.64 | -- | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.61 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 2 | 38.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 3 | 38.67 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 10 | 38.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 14 | 38.74 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 88 | 39.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 112 | 39.81 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 141 | 39.99 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 245 | 40.36 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 21 |
| 320 | 40.53 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 324 | 40.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 348 | 40.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 368 | 40.61 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 677 | 41.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 7 |
| 685 | 41.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 800 | 41.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 7 |
| 925 | 41.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 984 | 41.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 22 |