BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0970500 Os01g0970500|Os01g0970500
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0970500  Similar to Transcription factor IIA small subu...   225   5e-60
Os05g0107700  Transcription factor IIA small subunit (Transc...   194   1e-50

>Os01g0970500 Similar to Transcription factor IIA small subunit (Transcription
           factor IIA gamma subunit)
          Length = 109

 Score =  225 bits (574), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK 60
           MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK
Sbjct: 1   MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETKEE 109
           GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETKEE
Sbjct: 61  GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLLETKEE 109



>Os05g0107700 Transcription factor IIA small subunit (Transcription factor IIA
           gamma subunit)
          Length = 106

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 98/104 (94%)

Query: 1   MATFELYRRSTIGMCLTDTLDDMVSSGALSPELAIQVLVQFDKSMTSALEHQVKSKVTVK 60
           MATFELYRRSTIGMCLT+TLD+MVSSG LSPELAIQVLVQFDKSMT ALE+QVKSKV++K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILTDAIFKNEEITETINKVKIVACDSKLL 104
           GHLHTYRFCDNVWTFILT+A FKNEE TE + KVKIVACDSKLL
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLL 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,913,577
Number of extensions: 86247
Number of successful extensions: 157
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)