BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0104900 Os05g0104900|AK069824
         (78 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0104900  Similar to Clone ZZD1296 mRNA sequence              164   1e-41
Os08g0113300  Similar to Clone ZZD1296 mRNA sequence              129   4e-31

>Os05g0104900 Similar to Clone ZZD1296 mRNA sequence
          Length = 78

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  VPDYLCCQITFEIFRDPVITPSGITYERSIILEHLCKVGNFDPVTREPLKEHQLVPNLAI 60
          VPDYLCCQITFEIFRDPVITPSGITYERSIILEHLCKVGNFDPVTREPLKEHQLVPNLAI
Sbjct: 1  VPDYLCCQITFEIFRDPVITPSGITYERSIILEHLCKVGNFDPVTREPLKEHQLVPNLAI 60

Query: 61 KEAVQAYLKNHSWAYKLN 78
          KEAVQAYLKNHSWAYKLN
Sbjct: 61 KEAVQAYLKNHSWAYKLN 78



>Os08g0113300 Similar to Clone ZZD1296 mRNA sequence
          Length = 80

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 68/78 (87%)

Query: 1  VPDYLCCQITFEIFRDPVITPSGITYERSIILEHLCKVGNFDPVTREPLKEHQLVPNLAI 60
          VPD+LCC+IT +IFRDPVITPSGITYER++IL+HL +VG FDPVTRE L+ HQLVPNLAI
Sbjct: 3  VPDHLCCKITLDIFRDPVITPSGITYERAVILDHLHRVGKFDPVTRETLEPHQLVPNLAI 62

Query: 61 KEAVQAYLKNHSWAYKLN 78
          KEAV A+L  H WAY++ 
Sbjct: 63 KEAVHAFLSEHGWAYRMR 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,686,594
Number of extensions: 89154
Number of successful extensions: 232
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)