Os08g0113300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Clone ZZD1296 mRNA sequence.
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Os08g0113300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Clone ZZD1296 mRNA sequence.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.98 | 0.225 | 10.8 | -0.191 | 0.427 | -1.21 | -0.136 | 0.817 | -0.105 | 0.902 | 28.51 | 8 | -- | -- |
| 23.66 | 0.227 | 10.8 | -0.0574 | 0.427 | -1.24 | 0.126 | -- | -0.0815 | 0.949 | 28.2 | 9 | -- | -- |
| 23.03 | 0.224 | 10.8 | -0.168 | 0.429 | -1.21 | -- | 0.695 | -0.1 | 0.945 | 28.5 | 8 | -- | -- |
| 23.32 | 0.225 | 10.8 | -0.0548 | 0.343 | -1.23 | -- | -- | -0.0817 | 1.1 | 26.62 | 89 | -- | -- |
| 26.76 | 0.241 | 10.8 | -0.169 | -- | -1.01 | -- | 0.859 | -0.055 | -- | 25.5 | 300 | -- | -- |
| 45 | 0.314 | 10.7 | 0.243 | 0.129 | -- | -0.0922 | -- | 0.186 | 20.6 | -- | -- | -- | -- |
| 45.03 | 0.314 | 10.7 | 0.246 | 0.128 | -- | -- | -- | 0.186 | 20.7 | -- | -- | -- | -- |
| 27.2 | 0.243 | 10.8 | -0.0285 | -- | -1.09 | -- | -- | -0.0313 | -- | 25.09 | 262 | -- | -- |
| 23.4 | 0.225 | 10.8 | -- | 0.338 | -1.21 | -- | -- | -0.0749 | 1.14 | 26.65 | 89 | -- | -- |
| 45.96 | 0.317 | 10.7 | 0.246 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 46.62 | 0.319 | 10.8 | -- | 0.128 | -- | -- | -- | 0.158 | 20.9 | -- | -- | -- | -- |
| 27.22 | 0.243 | 10.8 | -- | -- | -1.08 | -- | -- | -0.0264 | -- | 25.1 | 256 | -- | -- |
| 47.55 | 0.322 | 10.7 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 2 | 23.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 23.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 4 | 23.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 6 | 23.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 23.44 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 8 | 23.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 9 | 23.51 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 11 | 23.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 23.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 29 | 24.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 31 | 24.40 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 34 | 24.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 43 | 24.57 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 53 | 24.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 68 | 24.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 94 | 25.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 99 | 25.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 116 | 25.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 118 | 25.32 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 121 | 25.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 147 | 25.46 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 169 | 25.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 296 | 26.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 384 | 26.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 539 | 27.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 549 | 27.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 629 | 27.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 644 | 27.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 646 | 27.94 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 682 | 28.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 692 | 28.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 693 | 28.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 771 | 28.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 776 | 28.15 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 777 | 28.15 | humidity | 70 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 835 | 28.21 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 857 | 28.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 952 | 28.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 964 | 28.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |