BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0103100 Os05g0103100|AK103317
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0103100 Translocon-associated beta family protein 419 e-118
Os01g0102700 Translocon-associated beta family protein 280 9e-76
>Os05g0103100 Translocon-associated beta family protein
Length = 225
Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/225 (91%), Positives = 206/225 (91%)
Query: 1 MAQQWRSXXXXXXXXXVPFAAAAGQDAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSA 60
MAQQWRS VPFAAAAGQDAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSA
Sbjct: 1 MAQQWRSLLFLLLLLLVPFAAAAGQDAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSA 60
Query: 61 TAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY 120
TAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY
Sbjct: 61 TAYDVSLNDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITY 120
Query: 121 RVPTKAALQEAYSTPMFPLDILAERPPQQKFELVKTCGEIWVAGLRCFLCRCVYLPGCKP 180
RVPTKAALQEAYSTPMFPLDILAERPPQQKFELVKTCGEIWVAGLRCFLCRCVYLPGCKP
Sbjct: 121 RVPTKAALQEAYSTPMFPLDILAERPPQQKFELVKTCGEIWVAGLRCFLCRCVYLPGCKP 180
Query: 181 VKIHCCKRKQEEALNXXXXXXXXXXGFTRMYSLRFYKVLLCTLRD 225
VKIHCCKRKQEEALN GFTRMYSLRFYKVLLCTLRD
Sbjct: 181 VKIHCCKRKQEEALNLFCCLFFVVFGFTRMYSLRFYKVLLCTLRD 225
>Os01g0102700 Translocon-associated beta family protein
Length = 205
Score = 280 bits (715), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 130/169 (76%), Positives = 151/169 (89%)
Query: 26 DAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLNDDSWPQEAFQLISGTTS 85
DAPF+VA KKV+LSRP PGVERLAV+L+LYNQGSATAYDVS+NDD+WP+EAF+L+SG S
Sbjct: 22 DAPFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSINDDTWPKEAFELVSGEMS 81
Query: 86 KIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAALQEAYSTPMFPLDILAER 145
K +E+LDPG TASH F+LETKVQG+FQGSPA+ITYRVPTKAALQEAYSTP+ LD+LAER
Sbjct: 82 KTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQEAYSTPILALDVLAER 141
Query: 146 PPQQKFELVKTCGEIWVAGLRCFLCRCVYLPGCKPVKIHCCKRKQEEAL 194
PP++KFE VK CGE+ VAG+RC+L VYLPGCKPVKI CK KQEEAL
Sbjct: 142 PPEKKFEWVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQRCKSKQEEAL 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,200,138
Number of extensions: 271149
Number of successful extensions: 441
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)