Os05g0103100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Translocon-associated beta family protein.
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Os05g0103100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Translocon-associated beta family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.28 | 0.313 | 10 | 0.0222 | 0.098 | 0.1 | -0.0428 | 4.72 | -0.313 | 4.32 | 30.04 | 642 | -- | -- |
| 46.1 | 0.316 | 10.1 | -0.26 | 0.16 | 0.644 | -0.135 | -- | -0.264 | 4.06 | 30.4 | 618 | -- | -- |
| 44.27 | 0.31 | 10 | 0.0211 | 0.0999 | 0.0998 | -- | 4.79 | -0.315 | 4.22 | 30.1 | 627 | -- | -- |
| 45.1 | 0.313 | 10.1 | -0.41 | 0.122 | 0.655 | -- | -- | -0.331 | 4.35 | 30.31 | 584 | -- | -- |
| 44.74 | 0.312 | 10 | 0.0461 | -- | 0.0445 | -- | 4.77 | -0.312 | -- | 30.1 | 654 | -- | -- |
| 52.43 | 0.339 | 10.1 | -0.311 | 0.109 | -- | 0.569 | -- | -0.383 | 19.8 | -- | -- | -- | -- |
| 53.27 | 0.342 | 10.1 | -0.327 | 0.113 | -- | -- | -- | -0.383 | 21.1 | -- | -- | -- | -- |
| 45.73 | 0.315 | 10.1 | -0.402 | -- | 0.575 | -- | -- | -0.329 | -- | 30.32 | 637 | -- | -- |
| 49.43 | 0.327 | 10.1 | -- | 0.104 | 0.584 | -- | -- | -0.292 | 3.91 | 30.4 | 557 | -- | -- |
| 54.01 | 0.343 | 10.1 | -0.327 | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
| 56.09 | 0.35 | 10.1 | -- | 0.114 | -- | -- | -- | -0.346 | 20.9 | -- | -- | -- | -- |
| 49.89 | 0.329 | 10.1 | -- | -- | 0.525 | -- | -- | -0.29 | -- | 30.56 | 622 | -- | -- |
| 56.83 | 0.352 | 10.1 | -- | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.89 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 16 | 43.04 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 31 | 43.08 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 33 | 43.09 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 35 | 43.17 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 71 | 43.41 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 74 | 43.47 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 14 |
| 83 | 43.63 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 12 |
| 86 | 43.65 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 95 | 43.78 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 115 | 43.86 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 14 |
| 116 | 43.86 | temperature | 30 | 720 | > th | dose dependent | sin | 6 | NA |
| 182 | 44.03 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 211 | 44.10 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 234 | 44.20 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 237 | 44.21 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 247 | 44.29 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 254 | 44.34 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 22 |
| 288 | 44.45 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 314 | 44.61 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 353 | 44.89 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 399 | 45.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 400 | 45.08 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 498 | 45.13 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 563 | 45.28 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 565 | 45.29 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 568 | 45.31 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 576 | 45.35 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 16 |
| 589 | 45.38 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 683 | 45.39 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 23 |
| 702 | 45.41 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 761 | 45.50 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 14 |
| 863 | 45.69 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 877 | 45.72 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 915 | 45.86 | humidity | 60 | 720 | < th | dose independent | rect. | 12 | 3 |
| 926 | 45.89 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 961 | 45.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |